Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00610 ATGGCTATTGTAAATCAACATGACGAATTTGCTCAGAAGAAGAAACCACCTACTGAGGATGAAAAGAGGAAGGAGAAAATTGTGGCTGGGAGTTTGATGAAAGCTTTGATGAGACCTGGTGGTGGTGATTCTGGACCTTCAGATGGTCACCAGGTTATCTATCACTGCACAGTTCGAACTTTGGATGGAGTAGTTGTGGAATCTACCCGATCTGAACATGGAGGCAAGGGCATACCAATAAGACATGTATTGGGTAAAAGCAAGATGCTATTGGGATTGCTAGAAGGAATTCCATCTATGTTGAAGGGTGAAGTGGCAATGTTCAAGATGAAGCCTCAGTTGCATTATAGTGAGGATGATTGTCCTATTTCTGCTCCTGATGGTTTTCCTAAGGATGATGAACTCCATTTTGAAATTGAGCTGTTGGAGTTTTTCAAGGCCAAGATTGTCACTGATGATTTGGGAGTGGTTAAAAAGGTTGTACGTGATGGGCAAGGTTGGGAATCTCCAAGAGAACCTTATGAAGTGAAGGCTTGGATTTCAGCAAAGACTGTTACTGGGAAATTGATCATGTCACGCACAGAAGGAGAACCATATTTCTTTACATTTGGAAAATCAGAGGTGCCTAAAGGTCTTGAAATGGGGATTGGAACAATGGTTCGGGAAGAGAAAGCTGTTATATATGTTACAAGCCAGTATTTAACCGAGTCTCCTCTGATGCCTGTTATAGAAGATTCTGAAGTCCAGTTTGAAGTGGAGCTTGTTCACTTTATTCAAGTACGAGACGTGCTTGGAGATGGCCGCCTGATAAAACGTCGGATTCGTGATGGAAAAGGTGATTTTCCAATGGATTGCCCCCTTCATGACAGTCTACTTCATGTTCATTACAAGGGTACTGTTCTCAATGAAGAAAAGAGGGTGTTCTATGACACAAGAGTTGATAACAACGGTCAACCATTGGATTTCTGTTCTGGAGAAGGGCTGGTACCAGAGGGATTTGAATTGTGTGTTCGTCTGATGCTACCAGGAGAGATGGCTCTTGTCACATGTCCGCCAGACTATGCTTATGATAAGTTTCCAAGGCCTTCAAATGTCCCTGAGGGTGCTCATATTCAATGGGAAATTGAGCTTCTATCTTTTGAAATGCCAAAGGACTGGACAGGAATGGACTTTAAAAGTATAATGAACGAAGCTGAAAATATCAGAAACACGGGTAATAGGTTATTCAAAGAAGGAAAATATGAACTTGCAAAGGCAAAGTATGAAAAGGTGCTTCGAGAATTTAATCATGTTAATCCACAAGATGACGACGAAGGAAAAGTTTTTGCAGATACACGTAATTTGCTACACCTAAATGTTGCTGCAAGCTTACTGAAGTTGGGAGAATGCAGAAAGTCCATTGAGACTTGTAATAAGGTTTTAGAAGCAAATCCTGCGCATGTCAAGGGTCTTTATCGTCGTGGAATGGCCTACATGGGTAATGGAGATTTTGAAGAAGCAAGGGCGGATTTCAAAATGATGATGAAGGTCGACAAATCAACTGAATCAGATGCAACTGCAGCTCTTTTAAAACTGAAGCAGAAAGAGCAGGAAGTTGAGAAAAAAGCTCGAAAACAATTTAAAGGGCTATTTGACAAGAAGCCTGGAGAAATAGCAGAAGTTAAAGCTAATGAAGATGAAGATCAAATCACAAGTGAAAGCCAGAAAGATGGTGCGGTACAGGGAGACTCATCAGATGAAACGAATTCGGAGGACTCACATGAAGCTGCACCTAATGTAGCAGATCGAAGGGGTTGGTTCTCTTACTTTTGGCCCACCGGTAATAGAATTTTTTCATCTCTTGGGCTTCAAAGATGTACCATACTATAA 1869 0.4136 MAIVNQHDEFAQKKKPPTEDEKRKEKIVAGSLMKALMRPGGGDSGPSDGHQVIYHCTVRTLDGVVVESTRSEHGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYSEDDCPISAPDGFPKDDELHFEIELLEFFKAKIVTDDLGVVKKVVRDGQGWESPREPYEVKAWISAKTVTGKLIMSRTEGEPYFFTFGKSEVPKGLEMGIGTMVREEKAVIYVTSQYLTESPLMPVIEDSEVQFEVELVHFIQVRDVLGDGRLIKRRIRDGKGDFPMDCPLHDSLLHVHYKGTVLNEEKRVFYDTRVDNNGQPLDFCSGEGLVPEGFELCVRLMLPGEMALVTCPPDYAYDKFPRPSNVPEGAHIQWEIELLSFEMPKDWTGMDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHVNPQDDDEGKVFADTRNLLHLNVAASLLKLGECRKSIETCNKVLEANPAHVKGLYRRGMAYMGNGDFEEARADFKMMMKVDKSTESDATAALLKLKQKEQEVEKKARKQFKGLFDKKPGEIAEVKANEDEDQITSESQKDGAVQGDSSDETNSEDSHEAAPNVADRRGWFSYFWPTGNRIFSSLGLQRCTIL 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00610 622 SUPERFAMILY FKBP-like 252 380 - -
Trre8g00610 622 Pfam Tetratricopeptide repeat 482 505 IPR019734 GO:0005515
Trre8g00610 622 SUPERFAMILY FKBP-like 150 257 - -
Trre8g00610 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 173 258 IPR001179 GO:0003755
Trre8g00610 622 MobiDBLite consensus disorder prediction 551 592 - -
Trre8g00610 622 SUPERFAMILY FKBP-like 24 148 - -
Trre8g00610 622 Coils Coil 518 538 - -
Trre8g00610 622 Gene3D - 3 147 IPR046357 GO:0003755
Trre8g00610 622 Gene3D - 259 385 IPR046357 GO:0003755
Trre8g00610 622 SMART tpr_5 398 431 IPR019734 GO:0005515
Trre8g00610 622 SMART tpr_5 447 480 IPR019734 GO:0005515
Trre8g00610 622 SMART tpr_5 481 514 IPR019734 GO:0005515
Trre8g00610 622 Gene3D Tetratricopeptide repeat domain 391 546 IPR011990 GO:0005515
Trre8g00610 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 381 IPR001179 GO:0003755
Trre8g00610 622 PANTHER INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6 148 259 - -
Trre8g00610 622 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 49 145 IPR001179 GO:0003755
Trre8g00610 622 MobiDBLite consensus disorder prediction 8 25 - -
Trre8g00610 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 255 IPR001179 GO:0003755
Trre8g00610 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 290 378 IPR001179 GO:0003755
Trre8g00610 622 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 46 142 IPR001179 GO:0003755
Trre8g00610 622 SUPERFAMILY TPR-like 395 536 IPR011990 GO:0005515
Trre8g00610 622 FunFam Peptidylprolyl isomerase 149 258 - -
Trre8g00610 622 FunFam Peptidylprolyl isomerase 259 383 - -
Trre8g00610 622 FunFam Peptidylprolyl isomerase 386 542 - -
Trre8g00610 622 ProSiteProfiles TPR repeat profile. 481 514 IPR019734 GO:0005515
Trre8g00610 622 Gene3D - 148 258 IPR046357 GO:0003755
Trre8g00610 622 MobiDBLite consensus disorder prediction 1 25 - -
Trre8g00610 622 FunFam Peptidylprolyl isomerase 6 148 - -
Trre8g00610 622 MobiDBLite consensus disorder prediction 551 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00610 Trre-Chr8 4394230 4403970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00610 25 546 Calmodulin-binding Proteins AT3G25230 29.135 8.02e-59 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00610 - - tpra:123919523 1164.06