Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00587 ATGGCTGCCACATTCTATAACCTTAAGTCTGAATCTGGGTTGAAGAAGCTTAATGAGTACCTTCTTACACGCAGTTACATCACTGGGTACCAAGCATCAAAGGATGATATCACTGTTTATGCAGCTCTGCCATCAGTTCCATCAAGTGAATTTGTGAACGTGGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCCGATGTTTCTGGGGAGGGATCTGGTGTCATTGTGGAATCTTCTCTCGTAGTTGAAGAGGCTGTTGCCACTCCTCCAGCTGCTGACACAAAGGCCACTGAAGCAGAGGATGATGATGATGATGACGATGTGGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTATTGTTGGATGTGAAACCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAAGCCGTGAGATCTGTTAAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTATGGTATCAAGAAATTGCAAATTATGCTTACTATTGTGGATGATTTGGTTTCCGTTGACAACATGGTTGAGGATTATCTTACTGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAGTAA 705 0.4355 MAATFYNLKSESGLKKLNEYLLTRSYITGYQASKDDITVYAALPSVPSSEFVNVARWYKHIDALLRISDVSGEGSGVIVESSLVVEEAVATPPAADTKATEAEDDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVKLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKICK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00587 234 SUPERFAMILY GST C-terminal domain-like 8 69 IPR036282 -
Trre8g00587 234 Gene3D - 136 232 IPR014717 -
Trre8g00587 234 SMART EF1_GNE_2 143 232 IPR014038 GO:0003746|GO:0006414
Trre8g00587 234 FunFam Elongation factor 1-beta 1 like 137 232 - -
Trre8g00587 234 CDD EF1B 141 232 IPR014038 GO:0003746|GO:0006414
Trre8g00587 234 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 232 - -
Trre8g00587 234 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 107 115 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trre8g00587 234 Coils Coil 115 135 - -
Trre8g00587 234 Gene3D - 2 76 - -
Trre8g00587 234 SUPERFAMILY eEF-1beta-like 140 232 IPR036219 -
Trre8g00587 234 Pfam EF-1 guanine nucleotide exchange domain 145 232 IPR014038 GO:0003746|GO:0006414
Trre8g00587 234 MobiDBLite consensus disorder prediction 100 116 - -
Trre8g00587 234 MobiDBLite consensus disorder prediction 117 137 - -
Trre8g00587 234 MobiDBLite consensus disorder prediction 90 137 - -
Trre8g00587 234 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 221 232 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trre8g00587 234 FunFam Elongation factor 1-delta 1 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00587 Trre-Chr8 4289034 4290737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00587 3 232 Eukaryotic Initiation Factors Gene Family AT2G18110 81.385 3.03e-116 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00587 K03232 - mof:131155160 303.523