Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00580 ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAACCAATCTCATGAACCTTTACTTCCTTTCTATGATTCTTCTTCTTTCATTACTAATTATAACCAACAACAAGGTTTGAAGCAAAATTCTTGTTCTTCTTCTAATTCTATGAAGGATTTAGAATGTTCTAATTTGATGATGCGTTTTTCAAGAGAAGAAGGTAAAAGGGTAATGAATAATATTTCTTCTTCTTCTAATAACTCTTGTTCTGTTTCTCATCATCCTTATTTTGAAACTTTGAATCATAATAATAATCAAGGAAATCATCATCATAATAATAATATTAATAACCCTTTTTTCTATCAAGCACAAAACATTCAAAATCTTAGAAATTTTGATGAACAACATAGTAGTAGTACTAGTACTATGATGTTGAATAATCATGAACCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAATCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTATGATTCAAGGGATGGTTGAAGGAGGAAGTGGTGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTAAAGGATTCTAGGTTTTTGAAACCAGCTCAAGAATTGTTGGAAGAGATTTGTGATGTTGGAATGAGAGGTGTTTGTAGTGAGAAGATTGTTGTTTTGGCTGATTCATCTTTGATGATGGAATCACCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGATGGTCGCAATAAGTCAAGATTATTGACTATGCTTGATGAGGTTTACAAGAGGTACCGGCAATACTACCAACAGATGCAATCGGTAGTAACATCATTTGAGTATGTTTCGGGCCTCAACAATGCAGCTCCATATGCAAGTTTGGCGATAAAAGCAATGTCGAAACATTTTCGGTGCTTGAAGAAGGCAATTACTGACCAGCTTCAGTACTCCAATAAGGCTCATTTTCACACAAGCAATCGGAAGGATGAATCTCCGAGATTTGGCAATAGTGAAAGAGGAGGTCCTTACGGCCATAGGTCAGGTTTTCTTGAGCAGCAACAACCTGTGTGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCTTGGCTCTTTGAGCACTTTTTGCATCCCTATCCTACCGATACGGACAAGATAATGTTGGCTAAACAAACCGGTCTGTCACGTAGCCAAGTGTCTAATTGGTTCATAAATGCAAGAGTAAGACTTTGGAAACCAATGGTTGAAGAAATACACATGCTAGAAACAAGGCAAACTCCAAAAGATTCACAAAAGGAAGAAAGTTCTAGAAACAAATCAAATGAACATCACCATTTGCCTTCAGATACTTCTCTACTTTCCGATAATCCGTCCACCTCGGCAGATAAGTTTCAAGACGTTGCTTACAAGCGTGCCGTGAACGAAATTCCAAACATACCAATTAGAAGTCAAGCACAACAACATCATCAACAACAACAACAAATGAGTCTACCTTTTCAACAAGTTGGTGTTGGAATGAACATTGGTAGTGGAAGCAATAACAATAATAATAGTAATAGTAATGTTTCATTGACATTAGGACTTTATCAAAATCATGGAATTGGTTTAGCTGAACCATATCCATTAAGTGCTGCTCAAAGATTTGGTCTTGGACTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAACAGGCATTTTGGTAGAGATGTTATTGGAGGTCAAATGTTTCATGACTTTGTAGGATGA 1836 0.3676 MASDEGFEGYHVPQQSRRDKLRVVVAQNQSHEPLLPFYDSSSFITNYNQQQGLKQNSCSSSNSMKDLECSNLMMRFSREEGKRVMNNISSSSNNSCSVSHHPYFETLNHNNNQGNHHHNNNINNPFFYQAQNIQNLRNFDEQHSSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGMIQGMVEGGSGGSVPFTGYASVLKDSRFLKPAQELLEEICDVGMRGVCSEKIVVLADSSLMMESPLERLSEEDPFGDDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQYSNKAHFHTSNRKDESPRFGNSERGGPYGHRSGFLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTPKDSQKEESSRNKSNEHHHLPSDTSLLSDNPSTSADKFQDVAYKRAVNEIPNIPIRSQAQQHHQQQQQMSLPFQQVGVGMNIGSGSNNNNNSNSNVSLTLGLYQNHGIGLAEPYPLSAAQRFGLGLETNNEGYVMSGFESQNRHFGRDVIGGQMFHDFVG 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00580 611 CDD homeodomain 378 439 IPR001356 GO:0003677
Trre8g00580 611 Pfam Associated with HOX 212 332 IPR006563 -
Trre8g00580 611 SUPERFAMILY Homeodomain-like 380 445 IPR009057 -
Trre8g00580 611 MobiDBLite consensus disorder prediction 446 474 - -
Trre8g00580 611 MobiDBLite consensus disorder prediction 342 365 - -
Trre8g00580 611 SMART HOX_1 378 442 IPR001356 GO:0003677
Trre8g00580 611 FunFam BEL1-like homeodomain protein 9 381 443 - -
Trre8g00580 611 MobiDBLite consensus disorder prediction 446 485 - -
Trre8g00580 611 SMART prehox3 207 333 IPR006563 -
Trre8g00580 611 Gene3D - 381 443 - -
Trre8g00580 611 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Trre8g00580 611 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 463 - -
Trre8g00580 611 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00580 Trre-Chr8 4217836 4222347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00580 146 611 Homeobox Transcription Factor Family AT5G02030 47.764 1.85e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre8g00580 POX 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00580 - - cam:101498314 845.884