Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00577 ATGGCGCAAGGAACGGGACGGAGTAGTAGAATTGTTGGAGATTATGTAGTTGGGAAGCAAATTGGAGCAGGTTCGTTTTCAGTTGTGTGGCATGCGAGACACAAAGTTCATGGAACAGAAGTTGCTATCAAAGAGATCGCTACTCTTAGACTTAATAAGAAGTTGCAAGAGAGTCTTATGTCTGAAATTTTCATCTTGAAGCGTATTAATCATCCTAATATTATCTCTTTACATGATATAATTCAGGCTCCTGGGAAGATACATCTTGTGTTGGAGTACTGTAAAGGGGGAGATCTTTCTTTGTACATTCAACGTCATGGAAGGGTACCGGAGGCAACTGCCAAGCATTTTATGCTTCAGCTGGCTGCCGGTCTACAAGTTCTTCGGGACAATAACCTTATTCATCGAGATCTGAAACCACAGAATCTTCTTCTCTCCAGAAATGATGAGAAGGCAGTGCTGAAGATCGCTGACTTTGGATTTGCAAGATCTCTGCAACCAAGGGGCCTTGCAGAAACATTATGTGGTTCACCACTCTACATGGCTCCAGAAATCATGCAACTGCAGAAGTATGATGCTAAGGCAGATCTCTGGAGTGTTGGAGCTATCTTATATCAGTTTGTTACAGGGAAAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATTATGAAATCAACAGAATTGCAGTTTCCATCTGATAACCAAAGTTTGAGTTCCGAGTGCAAAGACTTGTGTCAGAAATTACTACGCCGTAACCCAGTGGAACGTCTTACTTTTGAAGAATTCTTTAACCACCCATTCCTTAATCCAAAGCAAACGGAACAGGATGAACCATTAAGGAATAAAAGCTCTTCAAGGCTGGTAGGTGGGTTATCTTCAACAGTGACTGACCCTTTGAGAATAACCGAGGAAAATTATCAAGAGGACTGCTTACCTTTCATTCTAGATGATGATTCCAATGGACCTGAAAGAAGTACACTGTTTTCAAAGAAGTCCTCAATTAAGTCTACCTTTGGATTTGATCTAAATAGAAAACTAGATAAAGCAGAGTCAACTTCTATTTCTAATAATGTAAATTGTGCTTCCAGATATAGTAGTGTAACACATAGACCTGAAAACACTTCTAAAAGATTGGACAACCATAAAATTTTAGGAAGAAATCTCACTAGTCCCCTAGGATCTCCAGAACAGTTATTTGCAAACCCATATCCAAAAGTTACAGATTCACTTGAAAATATTGATCAAGAATATGTTCTTGTGTCTGGCCCCCCTATGGATGTTTCATCTTCTTCAGTGAATGCTTCAAAACCCAGCCATTCCTTATTTAGGTCAGGTAGTTTTCCCCAAGAGTCTTCTAATACAATCACTAGATTAAGTGCTCCAATGCAAATCGTTGGTGCATCTACCAATAGCATGTGCCAAATTGGAAGTTCAGGTAGTCAGGACTCTGCTCCTGGGACTTCACATGGATCAATGGATACAGGTGATGAACAGCCATCAACTAACTGCATGACAAGGGTAAAATCATTGCAACAGTATGCATCTGCCATCACAGAATTAGTTAATGAAAAGATTGAGGCAAGAAAGCAGCTAGAAGCATTTTCTATTCAGCTTGTAATTCTTGCCATTTGGAAGCAAGCACTGCACATATGCCATACACAGGCTGCCTCAGCTATGGAAGGAAGTCCAAGTCAAGAAGCTTCAAGATATAGAAGGAGCACCAGCAAGAAACATGGTAGTCCCGATTCGGAAGAATGTCTTGATGAAAACACCAAAGTGCCGAAGGATTTATTATCTCAAATTGAAAGTGATTTTTTGAGGGAATTTGAGCATGCCGAAGAACTTGCTAAGACCATAGAGCCTGGAAATACAGAAATGCCAGATGCAATGGAGACGATATTCCAAGCCGCCCTTGCTTTTGGGAAACATGGGGGTGTAGAAGAGCTTATGGGTGATACAGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTCCGTCTATTGGTTTTCCTTCTAGTGGAAGGACCATCTCTGATCCTCAACCCTCCATTTTCATTGACAAACTCAGACCGTTACAGGCTTCGGAATTACATTGATATTCTTAATAACAGACAAGGTTATTCAAGGTCTCAGAGAATGACACTTCTTAAGGGTGATGATAGTCAAGGCATCTTTAAGGAAAAGTTTTAG 2199 0.4029 MAQGTGRSSRIVGDYVVGKQIGAGSFSVVWHARHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIISLHDIIQAPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMLQLAAGLQVLRDNNLIHRDLKPQNLLLSRNDEKAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILYQFVTGKTPFTGNNQIQLLQNIMKSTELQFPSDNQSLSSECKDLCQKLLRRNPVERLTFEEFFNHPFLNPKQTEQDEPLRNKSSSRLVGGLSSTVTDPLRITEENYQEDCLPFILDDDSNGPERSTLFSKKSSIKSTFGFDLNRKLDKAESTSISNNVNCASRYSSVTHRPENTSKRLDNHKILGRNLTSPLGSPEQLFANPYPKVTDSLENIDQEYVLVSGPPMDVSSSSVNASKPSHSLFRSGSFPQESSNTITRLSAPMQIVGASTNSMCQIGSSGSQDSAPGTSHGSMDTGDEQPSTNCMTRVKSLQQYASAITELVNEKIEARKQLEAFSIQLVILAIWKQALHICHTQAASAMEGSPSQEASRYRRSTSKKHGSPDSEECLDENTKVPKDLLSQIESDFLREFEHAEELAKTIEPGNTEMPDAMETIFQAALAFGKHGGVEELMGDTESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMTLLKGDDSQGIFKEKF 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00577 732 Pfam Protein kinase domain 15 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00577 732 SMART serkin_6 15 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00577 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Trre8g00577 732 MobiDBLite consensus disorder prediction 574 593 - -
Trre8g00577 732 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre8g00577 732 FunFam Serine/threonine-protein kinase ATG1 7 313 - -
Trre8g00577 732 Gene3D Transferase(Phosphotransferase) domain 1 6 320 - -
Trre8g00577 732 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 8 641 IPR045269 GO:0004674|GO:0006914
Trre8g00577 732 MobiDBLite consensus disorder prediction 559 593 - -
Trre8g00577 732 ProSiteProfiles Protein kinase domain profile. 15 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00577 732 MobiDBLite consensus disorder prediction 475 505 - -
Trre8g00577 732 CDD STKc_ATG1_ULK_like 21 271 - -
Trre8g00577 732 Coils Coil 514 541 - -
Trre8g00577 732 FunFam Non-specific serine/threonine protein kinase 2 95 - -
Trre8g00577 732 MobiDBLite consensus disorder prediction 431 456 - -
Trre8g00577 732 SUPERFAMILY Protein kinase-like (PK-like) 11 433 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00577 Trre-Chr8 4193577 4201045 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00577 1 272 CBL-interacting serine-threonine protein kinases AT2G30360 36.559 7.78e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Trre8g00577 Pkinase 2.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00577 K08269 - gmx:100791596 1254.97