Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00576 ATGGAACAAGAAGAACCTACCGTTACGACGGTTCACGACGGAAGCGGCGACGAAGCTTTACTCGCATTAGGTGAAGGTGATGTCAGCAACGGTAACAAAGTTAAAGGTCCTTGGTCTCCTGAAGAAGACGCTGTTCTCAGCCGTCTTGTTAGCCAGTTCGGTGCTAGAAATTGGAGTCTCATCGCTCGTGGAATCGCTGGAAGATCCGGTAAGTCCTGTCGACTCCGCTGGTGTAATCAGCTTGACCCTGCTGTTAAACGCAAGCCCTTCACTGATGAGGAGGACCGGATCATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCTGCCATCGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAACTCTACTTTGAGGCGTCGGGGAATTGACCAGATTAGATTAGAATCTGGTATCATGGTGGAAGCCAAAGCATCGTCAGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCGGAAGGAAGAGATGTTAGTTCTATGGAGATTGTGGCCGATAAAAATGAAGGCAATGCAAGAACTGATGCTCAACTATACCATGAAGTCAGGGATCCTCCGACCCTTTTTAAGCCTGTAGCACGTGTAAGTGCTTTTAACGTGTACAACACTTTCAATGGTTCACAGCCTTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATCCGCCAAAATCAGATATGGAAATTTGTAAAATGCTCAACCGAACTAATGGTGACCGATCGGTGCCTAACCAGTGTGGTCATGGATGCTGTTCTTCTGTAAATGGTAACAGCTCAAAAATATCTCTGTTGGGACCAGAATTCATTGAGTATTCAGAACCTCAGTCTTTCCCAAGTTTTGAGCTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGATACTGCTGGCAAGGTTAATATGTAA 1011 0.4491 MEQEEPTVTTVHDGSGDEALLALGEGDVSNGNKVKGPWSPEEDAVLSRLVSQFGARNWSLIARGIAGRSGKSCRLRWCNQLDPAVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIDQIRLESGIMVEAKASSEETLSCGDVNSLKSSEGRDVSSMEIVADKNEGNARTDAQLYHEVRDPPTLFKPVARVSAFNVYNTFNGSQPSTSVPRPVPMQGPILHPPKSDMEICKMLNRTNGDRSVPNQCGHGCCSSVNGNSSKISLLGPEFIEYSEPQSFPSFELAAIATDISNLAWLKSGLENSSVKMMGDTAGKVNM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00576 336 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Trre8g00576 336 Gene3D - 89 135 - -
Trre8g00576 336 FunFam Transcription factor MYB44 89 135 - -
Trre8g00576 336 Gene3D - 34 86 - -
Trre8g00576 336 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Trre8g00576 336 SMART sant 34 83 IPR001005 -
Trre8g00576 336 SMART sant 86 134 IPR001005 -
Trre8g00576 336 FunFam MYB transcription factor 35 86 - -
Trre8g00576 336 PANTHER MYB PROTEIN-RELATED 35 182 - -
Trre8g00576 336 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Trre8g00576 336 Pfam Myb-like DNA-binding domain 35 81 IPR001005 -
Trre8g00576 336 CDD SANT 37 79 IPR001005 -
Trre8g00576 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 81 IPR017930 -
Trre8g00576 336 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Trre8g00576 336 CDD SANT 89 132 IPR001005 -
Trre8g00576 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00576 Trre-Chr8 4186561 4191501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00576 32 334 MYB Transcription Factor Family AT3G09230 50.467 7.86e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g00576 Myb_DNA-bind_6 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00576 K09422 - gmx:100813406 506.908