Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00554 ATGGGGTGTTTTACTATATTGAAGAGAAATAAGAAAAAGTCTGATCAGACTGCGTATGTAAAACGCGTAAGCCCTGGCGAGGATTCACCTAAAGTACTTCCTGAACCCCAAACTCATACTCGCTCACTCCAGTCCGCGCCTCCTAGTTTTAAGATAAGAGTGAAACCCATTCAACCTACCAATAAAGTCACTAACAATAGATCGACTAGAATACGAGCTTTGTCTGCTCCATCGGCTCTTGATGAAGCAGAACAAGATGCATTGGCCTCAATTGAGTATGAGGGACAAGAAGACTCAAAATACCGAACTGGATCATGGAAGGAGCAGCGAACTTCTAGTCCACAACCTTTACCGCTTCCATCTCCTAAGGGTGGCGGTACACTGAAGACTGTTGGAAGCTTTAAGTCGGGTGCAGCTAGTAGTCCCTTATATGCTTCTGGACCTTTGCCGCTTCCACCAACGGGGTCACTTCGAAACTTTTCATATGACGAACTTGCTGCCGCTTGCCTCAATTTCTCTTCAGATCGATACATGTCAGAATCTCTTTCATCCACCATCTATAAAGCTTCCTTTGGTGATGATACTTCAACTTCAAGTTCAAAGAAATTTGAAGCCACTGTCACACGCCTTCGCCCATCACCTCAGGGCCTGAAGGAATTCATAAATGAAGTTAATACTCTTGCATCTTTGGAGCATCCGAACCTCTGTAGATTGCTAGGATTTCACGCACGTGATGGTTCAGAACATAGGATGTTGGTTTATGAGAGGCTATACCATGGAAGCTTGGACCGCTTATTGTATGGGAAATCTGATGGACCATCAATTGATTGGAGTACAAGAATGAAAATTGCAATATGTGCTGCACTAGGTCTTTCTTTCTTGCACGAAGAAGGGCCTTTTCAGGCAATGTATAATGAATTCTCAACAGCCAACATTCAGATTGACAAAGATTTCAGTGCAAAGCTTTCAGGATATGGTTGTGTCGGACATGTTCCCAAGGAAGAGATTTCAAGCAGTTCATCCGCCGTTGGAAACCTATCGATGGAGACACTGGAGAAAGGAATGCTTACACCAAAGAGCAATGTATGGAGTTTCGGAATTTTTCTTCTAGAGCTACTTACAGGAAGAAAGAATCTCGATAGCCGCCACCCCAAGGAAGAGAGAAATTTGGTGAAGTGGAGTAGGCCTTTCCTATCTGATGATCATCGTTTGTCAATGATCATGGATCCTCAACTCAAAGGTCGCTTTCCTTCTAAAGCGGCGAGTACAATAGCTAACATTGCACAAAGATGCCTTCAAATGGAGCCATCAGAAAGACCAACCATGGGAACTGTTGTTGAGCATCTCAAAAAGATACAAGATTTGAAGCATTCTTCCAGATTTCCACTGCAAGAACCAGCACAAATGTCGAGATCACCAAGTCTTAATGGTATCATCCACCCTGCACCAAGGTCGAGTTTCTCTCCATCACCATCATCCAGAGCCCTGGTATCTGTTTCACCTCCAAGATGGTCAGGAGTGTCGATTCAACTTCCGCCTCGTGCTTTTTCTTCAACCCTCTATTTGGAAGAGCTTGATAGGCAAGAAAGCCGCAAGTTATCGTACTCGGCCTCAGCCTCAGCCTCTAGGAAGGCCAGTGTTGAAGGATTTTGA 1653 0.4434 MGCFTILKRNKKKSDQTAYVKRVSPGEDSPKVLPEPQTHTRSLQSAPPSFKIRVKPIQPTNKVTNNRSTRIRALSAPSALDEAEQDALASIEYEGQEDSKYRTGSWKEQRTSSPQPLPLPSPKGGGTLKTVGSFKSGAASSPLYASGPLPLPPTGSLRNFSYDELAAACLNFSSDRYMSESLSSTIYKASFGDDTSTSSSKKFEATVTRLRPSPQGLKEFINEVNTLASLEHPNLCRLLGFHARDGSEHRMLVYERLYHGSLDRLLYGKSDGPSIDWSTRMKIAICAALGLSFLHEEGPFQAMYNEFSTANIQIDKDFSAKLSGYGCVGHVPKEEISSSSSAVGNLSMETLEKGMLTPKSNVWSFGIFLLELLTGRKNLDSRHPKEERNLVKWSRPFLSDDHRLSMIMDPQLKGRFPSKAASTIANIAQRCLQMEPSERPTMGTVVEHLKKIQDLKHSSRFPLQEPAQMSRSPSLNGIIHPAPRSSFSPSPSSRALVSVSPPRWSGVSIQLPPRAFSSTLYLEELDRQESRKLSYSASASASRKASVEGF 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00554 550 MobiDBLite consensus disorder prediction 1 69 - -
Trre8g00554 550 Gene3D Phosphorylase Kinase; domain 1 156 255 - -
Trre8g00554 550 Gene3D Transferase(Phosphotransferase) domain 1 257 469 - -
Trre8g00554 550 Pfam Protein tyrosine and serine/threonine kinase 197 449 IPR001245 GO:0004672|GO:0006468
Trre8g00554 550 MobiDBLite consensus disorder prediction 528 550 - -
Trre8g00554 550 MobiDBLite consensus disorder prediction 93 132 - -
Trre8g00554 550 PANTHER OS01G0588500 PROTEIN-RELATED 101 453 - -
Trre8g00554 550 ProSiteProfiles Protein kinase domain profile. 172 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00554 550 SUPERFAMILY Protein kinase-like (PK-like) 151 459 IPR011009 -
Trre8g00554 550 MobiDBLite consensus disorder prediction 464 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00554 Trre-Chr8 4052584 4055213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00554 151 453 Receptor kinase-like Gene Family AT4G02010 38.065 2.36e-58 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Trre8g00554 PK_Tyr_Ser-Thr 3.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00554 - - tpra:123923511 1005.74