Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre8g00547 | ATGAACTTTAAGGAAGCAGTGGTTGCTGAAGACATTGATTTGTTCATGAATATTCATGGAGTGACAAAGTATGAATACATGGGAAAGGATAAAAAAATGAATCAAATATTTAACAAATCAATGGTTGATGTTTGTGCAACAGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGATATTGGTGGTGGAAGTGGACAAAATATCAAAATGATTATATCTAAGTACCCATCAATAAAGGGAATTAATTTTGATCTTCCTCAGGTGATTGAAAATGCACCACCACTTCCAGGCATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTGCACAGGGTGATGCCATGATACTAAAGGCTGTGTGTCACAATTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCTCTATCACCAAATGGAAAAGTGATTGTTGTGGAGTTTATATTAACAGAAGAACCAACAACAACTGAAGAATCTAAACTTGTTTCAACTCTTGACAATCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTGAGAAACAATGGGAGAATTTGAGCAAACTCTCTGGATTTTCCAAATTTCAAGTGGCTTGTCGTGCTTTCTCAAGTTTAGGAATTATGGAGTTTTATAAATGA | 675 | 0.3511 | MNFKEAVVAEDIDLFMNIHGVTKYEYMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDIGGGSGQNIKMIISKYPSIKGINFDLPQVIENAPPLPGIEHVGGDMFASVAQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIVVEFILTEEPTTTEESKLVSTLDNLMFITVGGRERTEKQWENLSKLSGFSKFQVACRAFSSLGIMEFYK | 224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre8g00547 | 224 | Gene3D | Vaccinia Virus protein VP39 | 34 | 213 | IPR029063 | - | |
| Trre8g00547 | 224 | PANTHER | O-METHYLTRANSFERASE | 14 | 214 | IPR016461 | GO:0008168 | |
| Trre8g00547 | 224 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 1 | 224 | IPR016461 | GO:0008168 | |
| Trre8g00547 | 224 | CDD | AdoMet_MTases | 64 | 161 | - | - | |
| Trre8g00547 | 224 | FunFam | Caffeic acid O-methyltransferase | 1 | 224 | - | - | |
| Trre8g00547 | 224 | Gene3D | - | 18 | 52 | IPR036388 | - | |
| Trre8g00547 | 224 | Pfam | O-methyltransferase domain | 4 | 205 | IPR001077 | GO:0008171 | |
| Trre8g00547 | 224 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 9 | 220 | IPR029063 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre8g00547 | Trre-Chr8 | 3994615 | 3995684 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre8g00547 | 2 | 224 | Monolignol Biosynthesis Gene Families | AT5G54160 | 49.107 | 2.96e-76 | 232 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre8g00547 | - | - | ag:AAB48059 | 420.239 |