Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00487 ATGGGTTCTCAAAACCATGATCAACATGAGTATGAAGCATGTGTTTTAGAGAATGGAGGGAACATAAAAGGAATATTAAGCAAGGAAATTATGAAACATGGTAGAACAGCACATAACATGTCATCATCTTCATTGCGCAAGAAATCTGACATCACTCTTGTCTCTAAACTTCATTGTGGAATCATTAGAAATATTTTGGCTAATTTCCAAGAAGTTATTCTTGGAACAAAGCTTTCCATTCTGTTTCCAACCATTCCTTTTGCCATTTTAGCTCAATGCTATGGTTTTGCAAGACCTTGGGTTTTTGCATTGAGCTTACTTGGTCTTATCCCTCTTGCTGAAAGACTCAGCTTCTTGACAGAACAAATAGCTTATTACACAGGTCCCACAGTGGGAGGACTTTTGAATGCAACATGTGGGAATGCTACAGAACTCATCATAGCAATATTTGCACTTAGCAATAACAAAATTGCTGTAGTCAAGTATTCTCTCCTTGGTTCCATTCTCTCCAACCTTCTTCTTGTTCTTGGAACCTCTCTATTATGTGGTGGTATTGCAAACCTTAGAGCAGAACAAAAATATGATAGAAGACAATCAGATATGAACTTGCTAATGCTTCTTATGGCATTGTTGTGTCACTTACTGCCAATGTTGTTTCAACATGGTTGTGCTTCGGTGGCTTTCGATGCAGACTCTTCTCTGCAATTTTCAAGAGCTGCTAGCATTGTGATGGTGATTGCATATTTTGCATACCTTATCTTTCAACTATGGACTCATCGGCAATTATTCGAAGCACAAGATGAATATGATGAAGAGGGTGAAAATGATTCAGAAGAAGCAGTTATAGGATTTGGGAGTGGTTTTGCTTGGCTGGTTGTTATGACTGTGTTCATTGCTATTTTGTCTGAATATGTGGTTGACACTATTGAGGATGCATCAGACTCATGGGGTCTATCAGTCAGCTTCCTCAGCATAATCATGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCTATCATATTTGCTTTCAAGAACAAACTGGACATTACTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTGGAATGTTTGTGGTTCCTCTATGTGTAATTGTTGCTTGGATTCTTGGTATTAAAATGGACCTCAATTTCAACCTCCTAGAAACAGGTTCTCTTGCTTTGGCAATAATAACCACAGGCTTCACATTACGGGATGGAACTTCTCACTACTTGAAAGGCCTTATTCTCTTGCTCTTGTACATTGTTATTGGGACATGCTTTTTTGTATAG 1296 0.3873 MGSQNHDQHEYEACVLENGGNIKGILSKEIMKHGRTAHNMSSSSLRKKSDITLVSKLHCGIIRNILANFQEVILGTKLSILFPTIPFAILAQCYGFARPWVFALSLLGLIPLAERLSFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLRAEQKYDRRQSDMNLLMLLMALLCHLLPMLFQHGCASVAFDADSSLQFSRAASIVMVIAYFAYLIFQLWTHRQLFEAQDEYDEEGENDSEEAVIGFGSGFAWLVVMTVFIAILSEYVVDTIEDASDSWGLSVSFLSIIMLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIGMFVVPLCVIVAWILGIKMDLNFNLLETGSLALAIITTGFTLRDGTSHYLKGLILLLLYIVIGTCFFV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00487 431 NCBIfam calcium/proton exchanger 64 430 - -
Trre8g00487 431 Gene3D - 280 429 IPR044880 -
Trre8g00487 431 Gene3D - 129 279 IPR044880 -
Trre8g00487 431 FunFam Vacuolar cation/proton exchanger 129 273 - -
Trre8g00487 431 FunFam Vacuolar cation/proton exchanger 275 431 - -
Trre8g00487 431 NCBIfam calcium/proton exchanger 84 430 IPR004798 GO:0006816|GO:0015369
Trre8g00487 431 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 431 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre8g00487 431 Pfam Sodium/calcium exchanger protein 287 425 IPR004837 GO:0016020|GO:0055085
Trre8g00487 431 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00487 Trre-Chr8 3688903 3693098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00487 15 431 Antiporters AT2G38170 68.868 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00487 K07300 - gmx:100782052 625.55