Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00482 ATGGTAGCACGATTTAAATCTGAAGTTGAAGTAGCTAGAGCTCACGATTTAATTGCTATTAAGATGTGGGGTGATTCTACAATTACTAATTTTCCGGTGAGTTGTTACTCGAAGCAAATCTCAGAAATGAAAAATATGCACATGAAGCGGATTATTTTTAATATTAGAAAGACCTCAAAGAAGACTGGTTCTGAATATATCGGTGTCAAAAGAGTCGAAGGCAATAAATGGGAAGCAAGATTGGAAAAGAGTAAGGAGAGGCCAAGCTATTTCTTGGGAATATTTGACACCGAGGAAAGAGCTGCTAGAGAATATGATGAATTTGCAAAGAGATTTAATGGAGAGGATGCATACACCAATTTTGGTCCCAACAATGGTATTGCTGATAATTCAGAAGGCATGGAGAGTTCAAATCAACAAGCTTCAATATTGGAGGAACAAACAGTAGTAATAGATGATGTTGATATTTTTGAAATCAATGAAGCACAATATCATCATCATCTTTTGCATCAACATGATGACTTGAACTCATCAGCTCCAATTATACTTTACAATTTCAATGATCATTCAGTTTATGAAGTTGGAAAAGATGGAAATAAAAGTCATTATAATGCTACTTCATTCTAA 627 0.3445 MVARFKSEVEVARAHDLIAIKMWGDSTITNFPVSCYSKQISEMKNMHMKRIIFNIRKTSKKTGSEYIGVKRVEGNKWEARLEKSKERPSYFLGIFDTEERAAREYDEFAKRFNGEDAYTNFGPNNGIADNSEGMESSNQQASILEEQTVVIDDVDIFEINEAQYHHHLLHQHDDLNSSAPIILYNFNDHSVYEVGKDGNKSHYNATSF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00482 208 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Trre8g00482 208 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Trre8g00482 208 Pfam AP2 domain 65 114 IPR001471 GO:0003700|GO:0006355
Trre8g00482 208 Gene3D AP2/ERF domain 2 34 IPR036955 GO:0003700|GO:0006355
Trre8g00482 208 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Trre8g00482 208 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 137 - -
Trre8g00482 208 CDD AP2 64 121 IPR001471 GO:0003700|GO:0006355
Trre8g00482 208 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00482 Trre-Chr8 3656074 3657866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00482 2 121 AP2-EREBP Transcription Factor Family AT1G51190 41.129 2.82e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g00482 AP2 1.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00482 K09285 - psat:127091562 219.935