Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00472 ATGGGTGTTGATTACTATAAAGTTCTTCAGGTAGATCGTAATGCCAAAGATGATGATCTCAAGAAAGCTTATCGCAAACTTGCCATGAAATGGCACCCTGATAAGAACCCTAATAACAAGAAAGATGCTGAAGCCAAATTCAAGCAAATCTCAGAAGCTTATGATGTTTTGAGTGATCCACAAAAAAGAGCTGTGTACGATCAATATGGTGAGGAGGGATTGAAGGGGCAGGTGCCTCCCCAAGGTGCAGGTGGATTTTCTGATGCCAGCGATGGGCCGACGATGTTCCGGTTCAATCCGAGAAGTGCGGATGACATATTTTCGGAGTTCTTCGGTTTTCAAAGACCCTTTGGTGGTGGAATGGGTGATATGGGTGGTCATCCTGGTGCTTCTGGTTTTCCAAGGGGAATGTTTCGAGATGACATTTTCTCTTCGTTTAGGAATGCGGCTGGCGAAGGATCTGGCAATGCACCAAGGAAAAGTGCACCTATAGAGAGAACATTACCATGCAGTTTGGAGGATTTGTACAAAGGGACCACCAAAAAAATGAAAATTTCCAGGGATGTTTCCGATTCTAGTGGGAGGCCTACCACAGTCGAGGAAATTCTAACCATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAAATAACATTTCCAGAGAAGGGAAATGAACAGAGAGGACTTATACCTGCAGACCTTGTTTTTATTATTGACGAGAAGCCTCATAGCGTCTTCAAGAGGGACGGCAATGATCTTGTTGTTACTCAGAAGATCTCTCTTGTAGAAGCTCTGACAGGTTACACAGCGCAAATAGCAACCCTTGATGGGAGGAATCTTACGGTCCCCGTCAACACCATCATTAGTCCATCGTATGAAGAAGTTGTTAAAGGAGAGGGTATGCCGATTCCTAAGGAACCTTCGAAAAAGGGAAACTTAAGAATCAAGTTCAACGTCAAGTTTCCATCTAGACTTACATCAGAGCAGAAGACCGGCATCAAGCGATTATTGACATCTTCATAG 1023 0.4389 MGVDYYKVLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPQGAGGFSDASDGPTMFRFNPRSADDIFSEFFGFQRPFGGGMGDMGGHPGASGFPRGMFRDDIFSSFRNAAGEGSGNAPRKSAPIERTLPCSLEDLYKGTTKKMKISRDVSDSSGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGLIPADLVFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTAQIATLDGRNLTVPVNTIISPSYEEVVKGEGMPIPKEPSKKGNLRIKFNVKFPSRLTSEQKTGIKRLLTSS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00472 340 Gene3D DnaJ domain 3 122 IPR036869 -
Trre8g00472 340 Pfam DnaJ domain 4 67 IPR001623 -
Trre8g00472 340 CDD DnaJ 4 59 IPR001623 -
Trre8g00472 340 FunFam DnaJ subfamily B member 13 3 122 - -
Trre8g00472 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 337 - -
Trre8g00472 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Trre8g00472 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 243 IPR008971 GO:0006457|GO:0051082
Trre8g00472 340 SUPERFAMILY Chaperone J-domain 3 124 IPR036869 -
Trre8g00472 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Trre8g00472 340 FunFam Dnaj homolog subfamily b member 160 241 - -
Trre8g00472 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Trre8g00472 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Trre8g00472 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Trre8g00472 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Trre8g00472 340 Gene3D - 163 241 - -
Trre8g00472 340 MobiDBLite consensus disorder prediction 73 93 - -
Trre8g00472 340 FunFam DnaJ subfamily B member 13 243 323 - -
Trre8g00472 340 Gene3D - 243 323 - -
Trre8g00472 340 SMART dnaj_3 3 62 IPR001623 -
Trre8g00472 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Trre8g00472 340 CDD DnaJ_C 162 325 - -
Trre8g00472 340 Pfam DnaJ C terminal domain 164 322 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00472 Trre-Chr8 3556451 3559530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00472 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 2.16e-09 57.0