Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00471 ATGGGGTCAAGTCCTCGCACTGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTCGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAGTTCTACGCACTCTGTGATCCAGATAAGGACAACTTGTGTCTCTATGGACATTCAAATGAATCATGGGAAGTGACTCTTCCCGCAGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCTCTCGGAATCAATTTTGCAAGGGATGGAATGAACCGTAGGGACTGGCTTTCCTTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTACCTCGGAGCTCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGACCTTCCAACTGTGTTTGAAGTTGTAACTGAGAGGAAGCCAATTAAGGACAAGCCAACTGTAGACAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCTAGTGACGGGCAAGTTAAAAGCATCCCAAAGTTGGCAGATGATCAAGGTTATGAGGAGGAGGATGACGAGCATAGTGAAACCCTTTGCGGGACCTGCGGTGGAAACTACAACGCTGATGAATTTTGGATTGGCTGTGATATTTGCGAGAGGTGGTACCATGGGAAATGTGTGAAGATTACTCCCGCAAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATGAAGAGGGGCAGGCCCTAA 717 0.4686 MGSSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHSNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSIPKLADDQGYEEEDDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00471 238 MobiDBLite consensus disorder prediction 146 160 - -
Trre8g00471 238 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Trre8g00471 238 PANTHER CPG BINDING PROTEIN 4 237 IPR045104 GO:0006355|GO:0042393
Trre8g00471 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 232 IPR013083 -
Trre8g00471 238 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Trre8g00471 238 MobiDBLite consensus disorder prediction 138 175 - -
Trre8g00471 238 SUPERFAMILY FYVE/PHD zinc finger 173 236 IPR011011 -
Trre8g00471 238 Pfam PHD-finger 185 233 IPR019787 -
Trre8g00471 238 CDD PHD_AL_plant 184 234 IPR044104 -
Trre8g00471 238 SMART PHD_3 184 232 IPR001965 -
Trre8g00471 238 FunFam PHD finger alfin-like protein 177 233 - -
Trre8g00471 238 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00471 Trre-Chr8 3551984 3554733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00471 3 237 Alfin-like Transcription Factor Family AT5G05610 78.390 2.66e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre8g00471 Alfin 5.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00471 K26274 - pvy:116109384 447.588