Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00467 ATGGAGGGTCATCAATTCCATCACAAAAACCAAAGACAACAACAAAATCCTCATCTTCATCAAAATATTAACGTTGTTGATGTTGTTGATAGATTTCCGCAATGGAGCATCCAAGAGACGAAAGAGTTTCTTATGCTCCGAGCGGAACTAGATCAAACTTTCATGGAGACTAAAAGGAACAAACAGTTGTGGGATGTTATCTCCAATCATATGAAAGAAAAGGGTTACCATAGAAGTGCAGAACAGTGCAAGTGCAAATGGAAAAATCTTGTTACTCGCTATAAGGGATGTGAAACAATGGAGACAGAAGCAATGAGATATCAATTTCCATTTTACAATGAACTTCAAGAAATTTTCACATCAAGGATGCAGAGGATGCTATGGGCGGAAGCCGAAGATGGATCGAAGAAAAAGGCGACACAGCATTCAACGGACGACGAAGATGAAGAAGGTAATGAAGAAAGTGAAGCAATATCTCAAAAGGGTAGAAGTAGAAAAAAGAAAAAAGCTAAGATAGTTAGCGAAAGCGGCGGTAGCAGCAGCAATTTCTTCAACAATTTGAAAGAGATTTTGGATGAATTCATGAGGCAACAACTACAAATTGAAGCACAATGGATGGAAGCATTTGAAGCTAGAGAGAATGAAAGGAAATTGAGGGAGATGGAATGGAGACAACAAATGGAAGTGTTGGAGAATGAGAGGATATTGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGGAGGATTAGAGAAGAAGCTAGGGCTGAGAAGAGGGATGCTTTAATCACAGCTTTGTTAAACAGGTTAGAAAGACAGTAG 822 0.3905 MEGHQFHHKNQRQQQNPHLHQNINVVDVVDRFPQWSIQETKEFLMLRAELDQTFMETKRNKQLWDVISNHMKEKGYHRSAEQCKCKWKNLVTRYKGCETMETEAMRYQFPFYNELQEIFTSRMQRMLWAEAEDGSKKKATQHSTDDEDEEGNEESEAISQKGRSRKKKKAKIVSESGGSSSNFFNNLKEILDEFMRQQLQIEAQWMEAFEARENERKLREMEWRQQMEVLENERILMEQRWREREEQRRIREEARAEKRDALITALLNRLERQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00467 273 Gene3D - 35 96 - -
Trre8g00467 273 SMART sant 31 93 IPR001005 -
Trre8g00467 273 Pfam Myb/SANT-like DNA-binding domain 34 118 IPR044822 -
Trre8g00467 273 Coils Coil 220 240 - -
Trre8g00467 273 MobiDBLite consensus disorder prediction 131 145 - -
Trre8g00467 273 MobiDBLite consensus disorder prediction 131 177 - -
Trre8g00467 273 FunFam Zinc finger and SCAN domain-containing 20 35 96 - -
Trre8g00467 273 CDD GT1 33 98 - -
Trre8g00467 273 ProSiteProfiles Myb-like domain profile. 35 91 IPR001005 -
Trre8g00467 273 PANTHER FI21293P1 9 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00467 Trre-Chr8 3518306 3519817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00467 8 272 Trihelix Transcription Factor Family AT2G38250 50.542 6.01e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre8g00467 Myb_DNA-bind_4 1.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00467 - - tpra:123892994 363.229