Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00457 ATGATGAAACGCAAGTCTTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGACATTCAATTTGCCAATACTCTTGCTTCTGATTATCCAAGAGAAAGTGATGGAGCCTGCTTTCAGATGAGATTGTCTTATAGCCAATCTGCTCAATTTCTCCTTTTTCTTGTTAAGTGGACTGATTGCCATCTTGCCGGAGCATTAGGATTGATTAATATTCTCGTATACAAGGTATTTGATGATGGGAAGACAACTATGTCTGTTCACGAAAGAAAAGCCACTCTAAAGGAGTTCTATGGTGTGATCTTTCCCTCTTTATTACAACTCCAGAGAGGAATCACCGATGTAGAAGAGAGAAAACAAAAAGATTTATGCGCTACAAAGTACAAGCCTAAAGATGTGATTATAAAAGGAAAGTTATCTCAAATTGATATAGAGAGGGAAGAAGAATGTCCTATTTGTATGGAGATGACCAACAAGGTTGTGTTACCCAAATGCAACCATTCTTTGTGTATGAAATGCTATCATGACTGGTACACAATATCTCGATCTTGTCCTTTCTGTCGCGACAGTCTTGAAAGAGTAAAGTCAGGTGACCTTTGGATCTACACGAGTAGCTGGGAGATAAATGATTTGGAATCAATCAATAAGGAGAATTTAAAAAGGGTATTTATGTACATTGAAAAGTTGCCTCTGATTTCTCCGGAACAAGTATTCATCGCTTATCCTCAAAACTTTTGA 732 0.3757 MMKRKSFKDSLKALEADIQFANTLASDYPRESDGACFQMRLSYSQSAQFLLFLVKWTDCHLAGALGLINILVYKVFDDGKTTMSVHERKATLKEFYGVIFPSLLQLQRGITDVEERKQKDLCATKYKPKDVIIKGKLSQIDIEREEECPICMEMTNKVVLPKCNHSLCMKCYHDWYTISRSCPFCRDSLERVKSGDLWIYTSSWEINDLESINKENLKRVFMYIEKLPLISPEQVFIAYPQNF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00457 243 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Trre8g00457 243 FunFam RING/U-box superfamily protein 129 195 - -
Trre8g00457 243 SMART ring_2 148 185 IPR001841 -
Trre8g00457 243 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Trre8g00457 243 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Trre8g00457 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 195 IPR013083 -
Trre8g00457 243 PANTHER RING FINGER PROTEIN 41, 151 5 238 - -
Trre8g00457 243 SUPERFAMILY RING/U-box 136 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00457 Trre-Chr8 3457863 3460785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00457 92 197 C3H Transcription Factor Family AT5G01960 31.250 6.97e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00457 K25840 - zju:107430836 384.415