Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00429 ATGGAAAACAAAGATGAAGATGTTAGTATAGGAGCAAACAAGTATAGAGAAAACCAAGCAATAGGAACTGCTGCACAATCTCAAAGCAACAATGAAGCTAAAGACTACAAAGAAGCACCTTCAGCACCTTTATTTGAGCATGGAGAGTTGTCATCATGGTCTTTTTATAGGGCAGGGATAGCTGAATTTGTGGCTACATTTTTGTTTCTTTATATAACGGTTTTAACTGTTATGGGTGTGAATAAATCAAATAATAAGTGCTCCTCAGTTGGTGCTCAAGGGATTGCTTGGGCTTTTGGTGGAATGATTTTTGCTCTTGTTTATTGTACTGCTGGTATCTCAGGTGGTCACATTAACCCAGCAGTGACATTTGGAGTTTTCTTGGCACGCAAGCTATCTCTAACAAGGACAATTTTCTACATAATTATGCAATGTTTGGGAGCTATTTGTGGTGCTGCTGTTGTTAAGGGTTTCCAACCACACCAATATGAAAGGCTTGGTGGTGGTGCCAACACTCTCAATAAAGGTTACTCCATAGGTGATGGACTTGGAGCAGAGATTGTTGGTACATTTGTTCTTGTTTACACCGTCTTCTCTGCTACTGATGCCAAGAGAAATGCAAGAGACTCACATGTTCCTATTTTGGCACCATTGCCAATTGGATTTGCTGTGTTTTTGGTGCATTTGGCTACAATACCAATTACAGGGACTGGTATTAACCCAGCTAGAAGTCTAGGTGCTGCTCTTATATACAACAAGGACCAAGCTTGGGATGATCATTGGATTTTCTGGGTTGGACCTTTCATTGGGGCAGCACTTGCAGCTCTGTACCATCAAATAGTGATCAGGGCCATCCCCTTCAAGTCAAAGTGA 873 0.4124 MENKDEDVSIGANKYRENQAIGTAAQSQSNNEAKDYKEAPSAPLFEHGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVNKSNNKCSSVGAQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGVFLARKLSLTRTIFYIIMQCLGAICGAAVVKGFQPHQYERLGGGANTLNKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00429 290 CDD MIP 57 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 286 IPR034294 -
Trre8g00429 290 Gene3D Glycerol uptake facilitator protein. 42 289 IPR023271 -
Trre8g00429 290 Pfam Major intrinsic protein 49 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PRINTS Major intrinsic protein family signature 136 155 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PRINTS Major intrinsic protein family signature 221 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PRINTS Major intrinsic protein family signature 57 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PRINTS Major intrinsic protein family signature 99 123 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 PRINTS Major intrinsic protein family signature 261 281 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 NCBIfam MIP family channel protein 61 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00429 290 ProSitePatterns MIP family signature. 117 125 IPR022357 -
Trre8g00429 290 SUPERFAMILY Aquaporin-like 49 283 IPR023271 -
Trre8g00429 290 FunFam Probable aquaporin PIP1-2 42 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00429 Trre-Chr8 3201505 3203400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00429 1 290 Major Intrinsic Protein MIP AT3G61430 82.759 1.43e-174 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00429 K09872 - cave:132192212 525.013