Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00398 ATGGCGCACAACCTTCTCCACGACTCAAAGGATAATGATATTCTTAAGCAGTTGAAAGATGGTACAGCAAAATTTGAGATTGTTTCTTCACTTGTTCCTTCCATTGTTCCTCGTTTCAATCGGAATACTAGCTTGTCTGGAGCTGGAAGTTGCAGCACTCTCTTTTTCGCTAGAATTGGCTCATCATCACCTGGTGGACAGGCAATGAAGAAACTTGAACGTTTTTCAGTTCAGAAGGTTACAGGAGATGGACGGTGTCTGTTTCGTGCACTGGTCAAAGGAATGGCTTACAACAAGGGAGTAGCTCTTAACCAACGCGAGGAGAGAGAAAATGCAGATGAATTAAGAATGGCAGTCAAAGAAGCTATATGTGAAAATGTAGGAGATCGTAAGTTATATGAAGAAGCCATCATTGCCGTCACGGTTGATGAGCCTTTACAACATTACTGCAGACGGATTTTGCAACCTGATTTCTGGGGAGGAGAATCAGAACTATTGGTACTGTCAAAGTTATGTAAGCAGCCAATTATTGTGTACATACCAGAGCACGAGCATCGAGGCGGTGGTTGGGGATCTGGTTTCATTCCCATTGCAGAATATGGAAGTGAGTTTTTAAAGGGTTCTAGCAGAAAAGCTGTGAGGTTGCTATTCAGTGGCAAAAACCATTATGACCTTTTGTTATGA 684 0.424 MAHNLLHDSKDNDILKQLKDGTAKFEIVSSLVPSIVPRFNRNTSLSGAGSCSTLFFARIGSSSPGGQAMKKLERFSVQKVTGDGRCLFRALVKGMAYNKGVALNQREERENADELRMAVKEAICENVGDRKLYEEAIIAVTVDEPLQHYCRRILQPDFWGGESELLVLSKLCKQPIIVYIPEHEHRGGGWGSGFIPIAEYGSEFLKGSSRKAVRLLFSGKNHYDLLL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00398 227 Pfam OTU-like cysteine protease 81 183 IPR003323 -
Trre8g00398 227 Coils Coil 105 125 - -
Trre8g00398 227 FunFam Cysteine proteinases superfamily protein 55 227 - -
Trre8g00398 227 CDD OTU_plant_OTU3-like 73 227 - -
Trre8g00398 227 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 66 226 - -
Trre8g00398 227 Gene3D - 59 227 - -
Trre8g00398 227 ProSiteProfiles OTU domain profile. 75 227 IPR003323 -
Trre8g00398 227 SUPERFAMILY Cysteine proteinases 75 226 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00398 Trre-Chr8 2860828 2863905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00398 80 179 C2H2 Transcription Factor Family AT1G50670 30.000 9.14e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00398 - - gmx:100807522 353.984