Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00393 ATGCGTAGTTTAAAGATCATGGATGGTTGCAAAGGTTCTCAGGTTTATGCTGTTCACCATCCTTCTTCTGGTGGAGGAAGCAGTGGAATTGGTGAAAAGCTTCTTCAACAGCTTCATGATCATATTAAAAGTCAAACCTTTAGAAGCAAATCGGTTCGAAATTTTCAATCGCCGAATCAGACACCGTCTGAGGTTGTTGCTGAGGGTTCTCTTTTGCCTTATGGGCTGCCTATGACAGACCTTCTTGAACCGAAAATTGAGCCGGTTTTAAGGCCGGTTGATTTTGTCGAAAGGCTAGCTGAATTGCATAATAAGATTGAGAATTGTTTGGAGGTTGACAGGTCTGAGGTTTATTTGGAGCATTGTTCGGTTTTTAGGGGATTATCTGATGCGAAATTGTTTCGCAGGAGTTTGAGGTCAGCACGACAACATGCTGTGGATGTCCACAGCAAAGTCGTGCTAGCCTCATGGCTTAGGTATGAGAGAAGAGAGGACGAGATGATTGGTTCGTCCTCGATGAATTGTTGTGGAAGGAATATTGAATGCCCTAAGGCTACGTTGGTGGCAAATGGGTATGATCCTGAATTGGTTTATGATCGTTGTTGCTGTCAACGTGATCGTGAGGGTGAGGATGGGGATGAGGAGGATTCAATGACATTGGTTGTTGATGATCAAGAATGCTCTACCTCGGATGAGGATGATGGAGGTGGGGATATGTCATTTTGTATTGGTGATGATGAAATTAGGTGTCATAGGTTCAATATGGCTTCACTTTCGAGGCCGTTTAAAACAATGTTGTATGGTGGATTCATAGAATCAAGGAGGGAGAAGATAAATTTTTCGAAGAATGAGATTTCCGTGGAGGCAATGAGGGCTGCTGAGGTTTTTAGTAGGACAAAAAGTTTGAGCACAATCGAACCTAATGTGGTTTTGGAGTTGTTATCTTTGGCGAACCGGTTTTGTTGCGATGAGATGAAGTGTGCTTGCGATGCGCATTTGGCGTTATTGGTTTGTGACATGGAGGATGCCTCATTGCTCATTGAGTATGGACTTGAGGAGACTGCATATCTTTTGGTTGCAGCTTGCTTGCAGGTTTTTTTGCGGGAGCTACCCGTTTCGATGGAGTGTTCAAGTTTTGTGAAATTGTTTTGTAGTCCAGAGGGCAGGGATAGGCTTGCTACGGCAGGGCATGCGTCGTTTGTATTGTATCATTTCTTGAGTCAAGTTGCCATGGAGGAGGAGATGCGGTCGAACACAACCGTGATGCTGTTGGAGAGATTAGTAGAGTGCGCAAAAGATGGGTGGGAGAAGCAACTAGCATATCACCAATTAGGTGTTGTTATGTTTGAGAGAAAAGAATACAAAGATGCACAGCATTGGTTCGAGGCAGCAGTGGAGGCAGGCCATGTTTATTCGTTAGTTGGAGTTGCAAGGGCAAAATATAAACGAGGTCATACATATTCGGCGTATAAGCTGATGAACTCCCTTATTGATGATTATAAACCTGTTGGTTGGATGTATCAGGAAAGGTCTTTGTATTGTATTGGGAAGGAAAAAATGATGGACTTGATCTCAGCGACCGAATTAGATCCAACGCTTCCGTTTCCTTATAAATTCCGAGCTGTTTCTTTGCTTGAGGAGAACAGGATTGGACCTGCCATTGCAGAAATAAACAAAATACTTGGTTTCAGAGTTTCTCCTGACTGCCTTGAATTGAGAGCTTGGTTCTTGATTGCCATGGAGGATTACGAAGGAGCACTCAGAGATGTTCGGGCAATTTTGACGTTGGACCCAAATTATATGATGTTCTACGGGAATATGCACGGTAATCACTTGGTAGAACTACTCGGTCCTGTTGTTCAGCAGTACAATCAGGCTGATTGCTGGATGCAATTGTACGACCGATGGTCCTCTGTTGATGATATTGGTTCACTGGCTGTTGTACACCAGATGTTAGAAAATGATCCAGGGAAAAGTCTTTTGCGTTTTCGGCAATCTCTCCTTTTGCTACGGCTAAATTGTCAAAAGGCTGCCATGCGTAGTTTGCGGCTGGCTAGAAATCATTCTACTTCTGAGCATGAAAGGCTTGTCTATGAAGGATGGATATTGTATGACACTGGTCATCGTGAAGAAGCATTAGCAAAGGCTGAGGAGTCCATTTCTATTCAAAGATCATTTGAAGCTTACTTTCTCAAAGCTTATGCATTAGCCGACTCAAGTCTCGATTCAGAGTCTTCAAAGTATGTTATCCATCTCTTGGAAGAAGCTCTTAGATGTCCTTCAGATGGTCTTCGGAAAGGACAAGCACTTAATAATCTCGGGAGCGTCTACGTAGATTGTGATAAGCTAGACCTTGCAGCTGACTGCTACATGAATGCACTCAATATCAAGCATACACGAGCGCATCAGGGGTTGGCGCGTGTATATCATCTTAAAAATCATCGCAAAGCTGCATATGATGAGATGACAAAGCTAATTGAAAAGGCTTGGAACAATGCATCAGCTTATGAGAAACGGTCAGAGTATTGTGATCGTGACATGGCAAAGAGTGATCTTACCACGGCAACACTGTTGGATCCTCTAAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTAATGGATGATCATAAGGAAGCTGAAGCAATTGAAGAGCTTTCAAGAGCCATTGAATTTAAGCCAGATCTGCAACTGTTACATCTTAGAGCAGCATTTTACGATTCAATGAATGATTTCGCTTCTACCATCCGAGACTGTGAAGCAGCACTTTGTTTTGATCCTGGCCATGCCGAGACACTTGAGCTTTGTAATAAAGCACGGGAGCGGATTAAAGAACAAAAGTGA 2844 0.4314 MRSLKIMDGCKGSQVYAVHHPSSGGGSSGIGEKLLQQLHDHIKSQTFRSKSVRNFQSPNQTPSEVVAEGSLLPYGLPMTDLLEPKIEPVLRPVDFVERLAELHNKIENCLEVDRSEVYLEHCSVFRGLSDAKLFRRSLRSARQHAVDVHSKVVLASWLRYERREDEMIGSSSMNCCGRNIECPKATLVANGYDPELVYDRCCCQRDREGEDGDEEDSMTLVVDDQECSTSDEDDGGGDMSFCIGDDEIRCHRFNMASLSRPFKTMLYGGFIESRREKINFSKNEISVEAMRAAEVFSRTKSLSTIEPNVVLELLSLANRFCCDEMKCACDAHLALLVCDMEDASLLIEYGLEETAYLLVAACLQVFLRELPVSMECSSFVKLFCSPEGRDRLATAGHASFVLYHFLSQVAMEEEMRSNTTVMLLERLVECAKDGWEKQLAYHQLGVVMFERKEYKDAQHWFEAAVEAGHVYSLVGVARAKYKRGHTYSAYKLMNSLIDDYKPVGWMYQERSLYCIGKEKMMDLISATELDPTLPFPYKFRAVSLLEENRIGPAIAEINKILGFRVSPDCLELRAWFLIAMEDYEGALRDVRAILTLDPNYMMFYGNMHGNHLVELLGPVVQQYNQADCWMQLYDRWSSVDDIGSLAVVHQMLENDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSTSEHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYALADSSLDSESSKYVIHLLEEALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKNHRKAAYDEMTKLIEKAWNNASAYEKRSEYCDRDMAKSDLTTATLLDPLRTYPYRYRAAVLMDDHKEAEAIEELSRAIEFKPDLQLLHLRAAFYDSMNDFASTIRDCEAALCFDPGHAETLELCNKARERIKEQK 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00393 947 SUPERFAMILY TPR-like 440 897 IPR011990 GO:0005515
Trre8g00393 947 SUPERFAMILY TPR-like 526 732 IPR011990 GO:0005515
Trre8g00393 947 SMART tpr_5 863 896 IPR019734 GO:0005515
Trre8g00393 947 SMART tpr_5 567 600 IPR019734 GO:0005515
Trre8g00393 947 SMART tpr_5 897 929 IPR019734 GO:0005515
Trre8g00393 947 SMART tpr_5 767 800 IPR019734 GO:0005515
Trre8g00393 947 SMART tpr_5 693 726 IPR019734 GO:0005515
Trre8g00393 947 SMART BTB_4 237 337 IPR000210 GO:0005515
Trre8g00393 947 Gene3D Tetratricopeptide repeat domain 421 605 IPR011990 GO:0005515
Trre8g00393 947 Gene3D Potassium Channel Kv1.1; Chain A 231 375 IPR011333 -
Trre8g00393 947 Pfam BTB/POZ domain 238 333 IPR000210 GO:0005515
Trre8g00393 947 Gene3D Tetratricopeptide repeat domain 843 947 IPR011990 GO:0005515
Trre8g00393 947 SUPERFAMILY POZ domain 237 333 IPR011333 -
Trre8g00393 947 Gene3D Tetratricopeptide repeat domain 661 829 IPR011990 GO:0005515
Trre8g00393 947 ProSiteProfiles TPR repeat profile. 767 800 IPR019734 GO:0005515
Trre8g00393 947 PANTHER ETO1-RELATED 1 946 IPR044631 GO:0010105
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00393 Trre-Chr8 2813031 2817563 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre8g00393 BTB 0.00015 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00393 - - gmx:100799641 1546.56