Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00392 ATGCAGCACAATATTTTCACTACAATGCGTAGTTTAAAGATCATGGATGGTTGCAAAGGTTCTCAGGTTTATGCTGTTCACCATCCTTCTTCTGGTGGAGGAAGCAGTGGAATTGGTGAAAAGCTTCTTCAACAGCTTCATGATCATATTAAAAGTCAAACCTTTAGAAGCAAATCGGTTCGAAATTTTCAATCGCCGAATCAGACACCGTCTGAGGTTGTTGCTGAGGGTTCTCTTTTGCCTTATGGGCTGCCTATGACAGACCTTCTTGAACCGAAAATTGAGCCGGTTTTAAGGCCGGTTGATTTTGTCGAAAGGCTAGCTGAATTGCATAATAAGATTGAGAATTGTTTGGAGGTTGACAGGTCTGAGGTTTATTTGGAGCATTGTTCGGTTTTTAGGGGATTATCTGATGCGAAATTGTTTCGCAGGAGTTTGAGGTCAGCACGACAACATGCTGTGGATGTCCACAGCAAAGTCGTGCTAGCCTCATGGCTTAGGTATGAGAGAAGAGAGGACGAGATGATTGGTTCGTCCTCGATGAATTGTTGTGGAAGGAATATTGAATGCCCTAAGGCTACGTTGGTGGCAAATGGGTATGATCCTGAATTGGTTTATGATCGTTGTTGCTGTCAACGTGATCGTGAGGGTGAGGATGGGGATGAGGAGGATTCAATGACATTGGTTGTTGATGATCAAGAATGCTCTACCTCGGATGAGGATGATGGAGGTGGGGATATGTCATTTTGTATTGGTGATGATGAAATTAGGTGTCATAGGTTCAATATGGCTTCACTTTCGAGGCCGTTTAAAACAATGTTGTATGGTGGATTCATAGAATCAAGGAGGGAGAAGATAAATTTTTCGAAGAATGAGATTTCCGTGGAGGCAATGAGGGCTGCTGAGGTTTTTAGTAGGACAAAAAGTTTGAGCACAATCGAACCTAATGTGGTTTTGGAGTTGTTATCTTTGGCGAACCGGTTTTGTTGCGATGAGATGAAGTGTGCTTGCGATGCGCATTTGGCGTTATTGGTTTGTGACATGGAGGATGCCTCATTGCTCATTGAGTATGGACTTGAGGAGACTGCATATCTTTTGGTTGCAGCTTGCTTGCAGGTTTTTTTGCGGGAGCTACCCGTTTCGATGGAGTGTTCAAGTTTTGTGAAATTGTTTTGTAGTCCAGAGGGCAGGGATAGGCTTGCTACGGCAGGGCATGCGTCGTTTGTATTGTATCATTTCTTGAGTCAAGTTGCCATGGAGGAGGAGATGCGGTCGAACACAACCGTGATGCTGTTGGAGAGATTAGTAGAGTGCGCAAAAGATGGGTGGGAGAAGCAACTAGCATATCACCAATTAGGTGTTGTTATGTTTGAGAGAAAAGAATACAAAGATGCACAGCATTGGTTCGAGGCAGCAGTGGAGGCAGGCCATGTTTATTCGTTAGTTGGAGTTGCAAGGGCAAAATATAAACGAGGTCATACATATTCGGCGTATAAGCTGATGAACTCCCTTATTGATGATTATAAACCTGTTGGTTGGATGTATCAGGAAAGGTCTTTGTATTGTATTGGGAAGGAAAAAATGATGGACTTGATCTCAGCGACCGAATTAGATCCAACGCTTCCGTTTCCTTATAAATTCCGAGCTGTTTCTTTGCTTGAGGAGAACAGGATTGGACCTGCCATTGCAGAAATAAACAAAATACTTGGTTTCAGAGTTTCTCCTGACTGCCTTGAATTGAGAGCTTGGTTCTTGATTGCCATGGAGGATTACGAAGGAGCACTCAGAGATGTTCGGGCAATTTTGACGTTGGACCCAAATTATATGATGTTCTACGGGAATATGCACGGTAATCACTTGGTAGAACTACTCGGTCCTGTTGTTCAGCAGTACAATCAGGCTGATTGCTGGATGCAATTGTACGACCGATGGTCCTCTGTTGATGATATTGGTTCACTGGCTGTTGTACACCAGATGTTAGAAAATGATCCAGGGAAAAGTCTTTTGCGTTTTCGGCAATCTCTCCTTTTGCTACGGCTAAATTGTCAAAAGGCTGCCATGCGTAGTTTGCGGCTGGCTAGAAATCATTCTACTTCTGAGCATGAAAGGCTTGTCTATGAAGGATGGATATTGTATGACACTGGTCATCGTGAAGAAGCATTAGCAAAGGCTGAGGAGTCCATTTCTATTCAAAGATCATTTGAAGCTTACTTTCTCAAAGCTTATGCATTAGCCGACTCAAGTCTCGATTCAGAGTCTTCAAAGTATGTTATCCATCTCTTGGAAGAAGCTCTTAGATGTCCTTCAGATGGTCTTCGGAAAGGACAAGCACTTAATAATCTCGGGAGCGTCTACGTAGATTGTGATAAGCTAGACCTTGCAGCTGACTGCTACATGAATGCACTCAATATCAAGCATACACGAGCGCATCAGGGGTTGGCGCGTGTATATCATCTTAAAAATCATCGCAAAGCTGCATATGATGAGATGACAAAGCTAATTGAAAAGGCTTGGAACAATGCATCAGCTTATGAGAAACGGTCAGAGTATTGTGATCGTGACATGGCAAAGAGTGATCTTACCACGGCAACACTGTTGGATCCTCTAAGGACTTATCCTTACAGATATAGGGCAGCAGTTTTAATGGATGATCATAAGGAAGCTGAAGCAATTGAAGAGCTTTCAAGAGCCATTGAATTTAAGCCAGATCTGCAACTGTTACATCTTAGAGCAGCATTTTACGATTCAATGAATGATTTCGCTTCTACCATCCGAGACTGTGAAGCAGCACTTTGTTTTGATCCTGGCCATGCCGAGACACTTGAGCTTTGTAATAAAGCACGGGAGCGGATTAAAGAACAAAAGTGA 2868 0.4306 MQHNIFTTMRSLKIMDGCKGSQVYAVHHPSSGGGSSGIGEKLLQQLHDHIKSQTFRSKSVRNFQSPNQTPSEVVAEGSLLPYGLPMTDLLEPKIEPVLRPVDFVERLAELHNKIENCLEVDRSEVYLEHCSVFRGLSDAKLFRRSLRSARQHAVDVHSKVVLASWLRYERREDEMIGSSSMNCCGRNIECPKATLVANGYDPELVYDRCCCQRDREGEDGDEEDSMTLVVDDQECSTSDEDDGGGDMSFCIGDDEIRCHRFNMASLSRPFKTMLYGGFIESRREKINFSKNEISVEAMRAAEVFSRTKSLSTIEPNVVLELLSLANRFCCDEMKCACDAHLALLVCDMEDASLLIEYGLEETAYLLVAACLQVFLRELPVSMECSSFVKLFCSPEGRDRLATAGHASFVLYHFLSQVAMEEEMRSNTTVMLLERLVECAKDGWEKQLAYHQLGVVMFERKEYKDAQHWFEAAVEAGHVYSLVGVARAKYKRGHTYSAYKLMNSLIDDYKPVGWMYQERSLYCIGKEKMMDLISATELDPTLPFPYKFRAVSLLEENRIGPAIAEINKILGFRVSPDCLELRAWFLIAMEDYEGALRDVRAILTLDPNYMMFYGNMHGNHLVELLGPVVQQYNQADCWMQLYDRWSSVDDIGSLAVVHQMLENDPGKSLLRFRQSLLLLRLNCQKAAMRSLRLARNHSTSEHERLVYEGWILYDTGHREEALAKAEESISIQRSFEAYFLKAYALADSSLDSESSKYVIHLLEEALRCPSDGLRKGQALNNLGSVYVDCDKLDLAADCYMNALNIKHTRAHQGLARVYHLKNHRKAAYDEMTKLIEKAWNNASAYEKRSEYCDRDMAKSDLTTATLLDPLRTYPYRYRAAVLMDDHKEAEAIEELSRAIEFKPDLQLLHLRAAFYDSMNDFASTIRDCEAALCFDPGHAETLELCNKARERIKEQK 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00392 955 SUPERFAMILY POZ domain 245 341 IPR011333 -
Trre8g00392 955 Gene3D Tetratricopeptide repeat domain 429 613 IPR011990 GO:0005515
Trre8g00392 955 SUPERFAMILY TPR-like 447 733 IPR011990 GO:0005515
Trre8g00392 955 PANTHER ETO1-RELATED 7 954 IPR044631 GO:0010105
Trre8g00392 955 Gene3D Tetratricopeptide repeat domain 669 837 IPR011990 GO:0005515
Trre8g00392 955 Gene3D Potassium Channel Kv1.1; Chain A 239 383 IPR011333 -
Trre8g00392 955 Pfam BTB/POZ domain 246 341 IPR000210 GO:0005515
Trre8g00392 955 SMART tpr_5 701 734 IPR019734 GO:0005515
Trre8g00392 955 SMART tpr_5 775 808 IPR019734 GO:0005515
Trre8g00392 955 SMART tpr_5 575 608 IPR019734 GO:0005515
Trre8g00392 955 SMART tpr_5 905 937 IPR019734 GO:0005515
Trre8g00392 955 SMART tpr_5 871 904 IPR019734 GO:0005515
Trre8g00392 955 SMART BTB_4 245 345 IPR000210 GO:0005515
Trre8g00392 955 Gene3D Tetratricopeptide repeat domain 851 955 IPR011990 GO:0005515
Trre8g00392 955 SUPERFAMILY TPR-like 761 943 IPR011990 GO:0005515
Trre8g00392 955 ProSiteProfiles TPR repeat profile. 775 808 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00392 Trre-Chr8 2813031 2817587 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre8g00392 BTB 0.00015 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00392 - - gmx:100799641 1560.04