Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00354 ATGGGAAGTTGTTGTAGCATCCAAGTTGAATGTGATCAAAAGATTATTGAAGGTGGGACCCGGGTCATATTAAATGGATCCTCTAAATATGTCTCAATGTACATCCAAAAGGGTACAAAAGGTACTAATCAAGATGCAATGACAGTTTGGGAGAACTTTGCTGGAGAAGAAGACACAATATTTTGTGGTGTGTTTGATGGTCATGGTCCTCGAGGACACAAATTTGCACAATCTATACGTGACAATCTACCCTCCAAACTCTCTACAACAATCAAAATGTCACAACAAAATGTCTCCAATGAAGATGATGCTAATGCTACAAACAAAACCACTTCTAATGATTCATGGGAAGAACAATTTTGTAGCTCCTTCAATCAAATGGATGAATATCTTGCTAAGAACGTTGACACTGACGGACTTTGTGGAGGTTGCGTAGCGATAACTTTAATTAAACAGGGTGACCAATTGATAATTGGCAATTTAGGGGATTCTCGTGCAGTTCTTTGCACAAAAGAAGGTGACAATCAACTTATTCCTATTCAACTTTCTGTTGACATGGTTCCAGATGTTCCAAGTGAAACTAATAGAGTGATTAAGTGTGGAGGTAGAGTTTTTGCAGCACAAGAAGATCCTGATGTAAAAAGAATTTGGATGCCTGAAGGTGATTGCCCTGGATTAGCTATGTCAAGAGCCTTTGGAGATTTTTGCCTAAAAGATCATGGCCTCTCCTCAGTTCCTGATTTATCTTATAGAAAACTTACAAAGCAAGATGAATTTGTTGTTTTAGCCTCTGATGGGATATGGAATGTGCTATCAAACGATGAAGTAATTAACGAAGTTGCATCAGCACCAAAGAGATCATTAGCAGCCAAATTGTTAGTCAAACGTGCAGTTAAAGCTTGGAAAAACAAGTATCCATTTTACTATGTTGATGATTGTTCAGCCATATGTTTGTTCTTGAATGATGAGTAA 972 0.3776 MGSCCSIQVECDQKIIEGGTRVILNGSSKYVSMYIQKGTKGTNQDAMTVWENFAGEEDTIFCGVFDGHGPRGHKFAQSIRDNLPSKLSTTIKMSQQNVSNEDDANATNKTTSNDSWEEQFCSSFNQMDEYLAKNVDTDGLCGGCVAITLIKQGDQLIIGNLGDSRAVLCTKEGDNQLIPIQLSVDMVPDVPSETNRVIKCGGRVFAAQEDPDVKRIWMPEGDCPGLAMSRAFGDFCLKDHGLSSVPDLSYRKLTKQDEFVVLASDGIWNVLSNDEVINEVASAPKRSLAAKLLVKRAVKAWKNKYPFYYVDDCSAICLFLNDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00354 323 ProSiteProfiles PPM-type phosphatase domain profile. 30 320 IPR001932 -
Trre8g00354 323 PANTHER PROTEIN PHOSPHATASE 29 318 IPR015655 GO:0004722|GO:0006470
Trre8g00354 323 SUPERFAMILY PP2C-like 22 322 IPR036457 -
Trre8g00354 323 Gene3D - 24 322 IPR036457 -
Trre8g00354 323 Pfam Protein phosphatase 2C 42 298 IPR001932 -
Trre8g00354 323 SMART PP2C_4 25 318 IPR001932 -
Trre8g00354 323 CDD PP2Cc 30 320 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00354 Trre-Chr8 2523536 2526183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00354 21 322 PP2C-type Phosphatase Gene Family AT1G79630 48.256 8.96e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00354 - - tpra:123922009 619.002