Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00349 ATGTCTTATAGTTTCAACAACAACCTTTTCAACACCAATGATAATAGTACCAACACCACCACCTTGGATGTTGCTAAATTTGTTGGATTTGATGAAGTAACTTACCCTTCTTATTCTGATTTTCCACCTGGTTTTAGCCCTGAGGAATTATTCAATTCACCTTCCTTTCTTTCTTCTCCTAAGATTCCTTCATCTTATACAACTGAGCCTTCTTCTGACCAAAGCATGAACCAACAACATAACAAGGAATTAGAAGAGATAAACTTATCTGAGCTCTCTTTCCAAACTCAAAAACAGAACATACATGATCTCTTTCAATCTTCCACAAATATGTTTCAAGTGGAGGAGCCACTAAAGAAAGAGGACACATTGATATTCAATGAAACTACAAAGCAAAACAATTTTTCATTTGAGAGAACAACAAAACATGAAACACAAACTAATTCTTCAGCTCCTAGTTCTACTTTTGTCAACAACAATAATGTTTCTATGTCTATTAAGGAACAAAGAAAATCAGAAGAAGATGGATACAAGTGGAGAAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGTTATTATAAGTGCACTAATCCTATTTGCTTGATGAAGAAGAAAGTTGAAAGGTCTTTGGATGGATATATTACTGAAATTGTTTATAAGGGAAATCATAACCATCCTAAACCTTTGTCTACAAAAAGAAGAACAAGTTCTCAATCAATGATTTCTGATTTTTCTTTGGGAGAAGATGAGTTTGAGCAAACATCACAAACTAGTTTTTCTGGAGGAGATTATGATGAGTTTGGACCTGAGGCCAAAAGATGGAAGGGAGATAATGAATCTTATTCCATAGAAGGGTGTAGAACTGTTAAGGAACCTAGAGTTGTGGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGATATAGGTGGAGGAAATATGGACAGAAAGTAGTCAAAGGAAATCCAAACCCAAGGAGCTACTACAAATGTGTAATCCAAGGTTGTCCTGTGAGAAAACATGTTGAGAGAGCAGCACATGATATGAAAGCAGTAATAACAACATATGAAGGGAAACATAATCATGATGTACCTTTAGGAAGAGGAAGTTCAAGTTATAACATGAACAAAACTTCTCTTAACAACAACACATGTAATGTAACACCTATTAAGCCTTCAACAGTTACTAATTATTCTAGCTTATCAAATTTCACAAATTCACTTCATGATCAATCAAAGCTACCAAATTATGGAACTCAAGAAGATCAACATTTTCAGCATAAAAGCTTTTTGGATAAATCAATTGGTTCAAATACCAATTATGATCAATATTCGGCTAAGGATTACTCCTTCCTTCAGTCTTTTATGTCGAAGAACTTTTAA 1395 0.3391 MSYSFNNNLFNTNDNSTNTTTLDVAKFVGFDEVTYPSYSDFPPGFSPEELFNSPSFLSSPKIPSSYTTEPSSDQSMNQQHNKELEEINLSELSFQTQKQNIHDLFQSSTNMFQVEEPLKKEDTLIFNETTKQNNFSFERTTKHETQTNSSAPSSTFVNNNNVSMSIKEQRKSEEDGYKWRKYGEKQVKGSENPRSYYKCTNPICLMKKKVERSLDGYITEIVYKGNHNHPKPLSTKRRTSSQSMISDFSLGEDEFEQTSQTSFSGGDYDEFGPEAKRWKGDNESYSIEGCRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVIQGCPVRKHVERAAHDMKAVITTYEGKHNHDVPLGRGSSSYNMNKTSLNNNTCNVTPIKPSTVTNYSSLSNFTNSLHDQSKLPNYGTQEDQHFQHKSFLDKSIGSNTNYDQYSAKDYSFLQSFMSKNF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00349 464 Gene3D WRKY domain 158 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 Gene3D WRKY domain 294 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 100 389 IPR044810 GO:0003700
Trre8g00349 464 SUPERFAMILY WRKY DNA-binding domain 171 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 FunFam WRKY transcription factor 159 233 - -
Trre8g00349 464 FunFam WRKY transcription factor 33 296 362 - -
Trre8g00349 464 SMART WRKY_cls 309 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 SMART WRKY_cls 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 SUPERFAMILY WRKY DNA-binding domain 301 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 Pfam WRKY DNA -binding domain 310 366 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 Pfam WRKY DNA -binding domain 174 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 ProSiteProfiles WRKY domain profile. 174 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 ProSiteProfiles WRKY domain profile. 304 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00349 464 MobiDBLite consensus disorder prediction 56 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00349 Trre-Chr8 2496974 2501162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00349 155 411 WRKY Transcription Factor Family AT2G38470 55.814 2.63e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g00349 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00349 K13424 - gmx:100127367 517.694