Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00342 ATGGAACCAATTTTTGTTGAGATTGCTGCTGGAGAAGACATTGTGTCTACTCTCGTCAATTTGGCTCAATCTCATCAAGCGGCTGGAATCGTTGTGTCGAGTGGCTTTGGTGCCATCTCCGAAGTTGGCCTTTCCCCCTCAGCGTCTCATACCCCTGCTTCTCCTGTCCAAGGGTCATTTCACATGATACGTCTCTGTGGAACTCACATCAATGTCAATGATGATTGCATTCCTCCTCAGTTCATGGATACTTATGGCAGATCTTCTTTTTTTTCCATTTTGTTCCATGACAATCATGGACAAAATTTTGGTGGAATTGTAGTAGGCAAGATTATGACTGCCGGTGTTGTTTTAGTGCGAGGTTTTCTTTTAAGAAAACCAAATTTTCGTAGGGTGGGAGGAATAAATGAATTTGTTGAAGGAAACGAAGAGGATGATGACTCGATTTATGATGATGACGACAATGATGATGATGATGATGATGATGATGATGATGGTGACGACAACGGCGATATTGTTGATGCTGTCACCAATGCTGTTGATGTACTAGTAGCATTGAAAATTGTTAATTGA 573 0.4136 MEPIFVEIAAGEDIVSTLVNLAQSHQAAGIVVSSGFGAISEVGLSPSASHTPASPVQGSFHMIRLCGTHINVNDDCIPPQFMDTYGRSSFFSILFHDNHGQNFGGIVVGKIMTAGVVLVRGFLLRKPNFRRVGGINEFVEGNEEDDDSIYDDDDNDDDDDDDDDDGDDNGDIVDAVTNAVDVLVALKIVN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00342 190 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 143 IPR014476 GO:0003680
Trre8g00342 190 ProSiteProfiles PPC domain profile profile. 1 147 IPR005175 -
Trre8g00342 190 Pfam Plants and Prokaryotes Conserved (PCC) domain 3 118 IPR005175 -
Trre8g00342 190 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 120 - -
Trre8g00342 190 Gene3D - 3 139 - -
Trre8g00342 190 MobiDBLite consensus disorder prediction 142 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00342 Trre-Chr8 2464694 2465266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00342 1 175 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 22.472 2.09e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00342 - - psat:127080935 115.931