Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00325 ATGGATTTTTGGCCAGATTTTCTTGCAAGTAGTTCAGGTAGAGAATTTGTGGCAGGTGGATTTGGAGGCACTGCTGGTGTAATTTCTGGATACCCTTTGGATACCCTTAGAATCAGACAACAGAGTGGTCACAATGGTTCTGCTTTTAGCATCCTTAGAAATATGGTCTCTAAAGAGGGATTTGCTTCTTTGTACCGTGGGATGGGTGCACCATTGGCATCAGTTACTTTTCAGAATGCTGTGGTTTTTCAAACATATGCAGTTCTTTCAAGGGCATGTGATTCATCCGATTCTGCTAAAGACCCTCCATCCTACAAGAGTGTTGCATTAGGTGGAATGGGCACAGGTGCTCTTCAAAGTTTATTGCTTTCCCCTGTGGAGCTGATTAAAATTCGACTTCAGCTGCAAAACACAAACCAGTCAAAAGAATCAGGAACAAGTCCTTCAAAAGTAGCTAAAAATATATGGAGAAAAGAGGGTTTGCGCGGCATATATCGAGGACTTGGCATCACTGTAATGAGGGATGTACCTTCTCATGGTTTTTACTTCTGGACATATGAATACATGAGGGAACAATTGCATCCAGGTTGTAGAAAAAGTGGTCAAGAAAGTTTGAATACTATGTTGGTGTCTGGAGGATTAGCAGGGGTAGCGAGTTGGGTTTGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAAGCTCAAACACCGTCTTCGCTAAAATACAATGGTGTTTTTGACTGTATCGTAAAAAGCGTCAAAGAAGAAGGATACCTTGTGTTGTGGCGTGGTTTAGGAACTGCAGTCTCCAGAGCATTTGTTGTGAATGGTGCTGTATTTGCTGCTTATGAATTTACACTGAGGTTTCTGTTTAACAATGAAAACGTTCAAATTCAGGAAACAATTTAG 912 0.4112 MDFWPDFLASSSGREFVAGGFGGTAGVISGYPLDTLRIRQQSGHNGSAFSILRNMVSKEGFASLYRGMGAPLASVTFQNAVVFQTYAVLSRACDSSDSAKDPPSYKSVALGGMGTGALQSLLLSPVELIKIRLQLQNTNQSKESGTSPSKVAKNIWRKEGLRGIYRGLGITVMRDVPSHGFYFWTYEYMREQLHPGCRKSGQESLNTMLVSGGLAGVASWVCCYPFDVVKTRLQAQTPSSLKYNGVFDCIVKSVKEEGYLVLWRGLGTAVSRAFVVNGAVFAAYEFTLRFLFNNENVQIQETI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00325 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Trre8g00325 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 291 - -
Trre8g00325 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Trre8g00325 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Trre8g00325 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Trre8g00325 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Trre8g00325 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Trre8g00325 303 Pfam Mitochondrial carrier protein 109 193 IPR018108 -
Trre8g00325 303 Pfam Mitochondrial carrier protein 12 91 IPR018108 -
Trre8g00325 303 Gene3D Mitochondrial carrier domain 10 302 IPR023395 -
Trre8g00325 303 FunFam Mitochondrial arginine transporter BAC2 11 301 - -
Trre8g00325 303 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Trre8g00325 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Trre8g00325 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00325 Trre-Chr8 2353094 2355190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00325 1 294 Antiporters AT1G79900 70.508 2.44e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00325 K15109 - gmx:100812056 493.426