Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00314 ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACCGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAACGCGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACCGGGACTTCCCAAGCTGATTGCGCTGTTCTCATCATTGATTCCACTACTGGTGGTTTTGATTCTAGAGTAGAAACCGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAGTACTCCAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGATAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATCGAGCGCTCCACAAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCATCAGACAAGCCCCTCCGTTTGCCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACCGGTGTCTTGAAACCTGCAACGGTAGTGACGTTTGCCCCTAGTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCATCATGAAGCTCTCACTGAGGCCCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGATCCAGCCAAGGAGGCCGCTAACTTCACATCTCAAGTGATCATCATGAATCACCCTGGCCAGATTGGAAATGGCTATGCTCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACCAAGATCGACAGGCGTTCTGGTAAGGAGATTGAGAAACTGCCCAAATTCTTGAAGAATGGTGATGCTGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGCCGAGACTTTCTCTGAATATCCTCCACTCGGCCGTTTTGCTGTCAGAGACATGCGTCAAACTGTGGCTGTTGGAGTCATCAAGGCTGTGGAAAAGAAGGAACCCAGCGGAATACCTAAGAAGAAGAAATGA 1341 0.4653 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFDSRVETGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPATVVTFAPSGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKLPKFLKNGDAGIIKMIPTKPMVAETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKEPSGIPKKKK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00314 446 NCBIfam translation elongation factor EF-1 subunit alpha 1 437 IPR004539 GO:0003746|GO:0005525|GO:0006414
Trre8g00314 446 CDD EF1_alpha 9 231 - -
Trre8g00314 446 Gene3D Translation factors 233 320 - -
Trre8g00314 446 PANTHER TRANSLATION FACTOR 4 436 - -
Trre8g00314 446 FunFam Elongation factor 1-alpha 327 434 - -
Trre8g00314 446 Pfam Elongation factor Tu domain 2 252 317 IPR004161 GO:0005525
Trre8g00314 446 FunFam Elongation factor 1-alpha 233 320 - -
Trre8g00314 446 CDD EF1_alpha_II 234 324 - -
Trre8g00314 446 FunFam Elongation factor 1-alpha 1 230 - -
Trre8g00314 446 Pfam Elongation factor Tu GTP binding domain 6 226 IPR000795 GO:0003924|GO:0005525
Trre8g00314 446 Hamap Elongation factor Tu [tuf]. 2 436 IPR004539 GO:0003746|GO:0005525|GO:0006414
Trre8g00314 446 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Trre8g00314 446 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 234 IPR000795 GO:0003924|GO:0005525
Trre8g00314 446 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 330 433 IPR009001 -
Trre8g00314 446 SUPERFAMILY Translation proteins 235 325 IPR009000 -
Trre8g00314 446 Gene3D Translation factors 327 434 - -
Trre8g00314 446 CDD EF1_alpha_III 327 430 - -
Trre8g00314 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 253 IPR027417 -
Trre8g00314 446 Pfam Elongation factor Tu C-terminal domain 326 433 IPR004160 -
Trre8g00314 446 Gene3D - 1 230 IPR027417 -
Trre8g00314 446 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Trre8g00314 446 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Trre8g00314 446 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Trre8g00314 446 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00314 Trre-Chr8 2285948 2287694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00314 1 440 Eukaryotic Initiation Factors Gene Family AT5G60390 93.636 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00314 K03231 - thj:104810843 837.795