Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00310 ATGAGTGTGGTGGGTTTTGATTTTGGTAACGAGAGTTGCATTGTTGCTGTTGCTAGACAGAGAGGTATTGATGTTGTGTTAAACGATGAATCGAAACGCGAAACCCCTGCTATTGTGTGTTTCGGTGATAAGCAGCGTTTTATTGGTACTGCTGGTGCTGCTTCAACTATGATGAATCCTAAGAATTCAGTTTCACAGATTAAGAGACTTATTGGGAAGAAATTTTCTGATCCGGATTTGCAGAGTGATCTTAAGTCTTTGCCTTATAGTGTTAGCGAAGGACCAGATGGGTATCCTTTGATTCATGCTAGGTATTTAGGGGAAGTTAAGACGTTTACTCCTACGCAAGTGTTCGCGATGATGTTGTCGAATATGAAAGAGATCGCTACGAAAAATCTTAATGCTGCGGTTCATGATTGTTGCATTGCGATTCCGGTTTATTTTACTGATCTTCAGAGAAGGGCTGTTTTGGATGCTGCAACTATTGCTGGTTTGCACCCGCTTAGGTTGCTCCATGAAACTACTGCGACTGCATTGGCGTATGGGATTTATAAGACAGATCTGTCTGAAACTGATCCGCTGAATGTGGCCTTTGTGGATATTGGACATGCTAGTATGCAGGTGTGCATTGCTGGATTCAAAAAGGGGCAGCTGAAAGTGTTGGCTCATTCGTTCGATAGGTCTCTTGGTGGTAGGGATTTTGATGAGGTTTTGTTCCATCATTTTGCTGGGAAGTTTAAAGAGGAGTACAAAATTGACGTGCTTCAGAATGCTAGGGCATGTTTGAGGCTTAGGGCTGCTTGTGAGAAGATGAAGAAGATGCTCAGTGCAAATCCTGTGGTGCCCTTGAACATTGAGTGCTTGATGGATGAGAAGGATGTGAAGGGTATAATGAAGCGTGACGAGTTTGAGGAACTGAGTCTCCCGATTTTGGAGCGTGTCAAGGGACCTTTGGAGAGGGCTCTTGCCGAAGCAGGACTCTCAGTTGATGATATACATATGGTTGAGGTCGTTGGTTCGGGCTCTCGTGTACCAGCTATAAACAAAATATTGACTGAGTTTTTCAAGAAGGAGCCTAGGCGGACAATGAACGCCAGTGAATGTGTTGCTAAAGGGGCTGCATTGCAATGTGCTATTCTTAGCCCAACATTTAAAGTGCGAGAATTTCAGGTCAACGAAAGCTTTCCTTTCGCAATTTCTCTTGCATGGAAAGGTTCTGCTCCAGATGCACAGGATAGTGGACCTGATAATCAGCAGAGTTCCCTTGTTTTTCCCAAGGGTAATCCCATACCAAGTATCAAGGCACTGACATTCTACAGGTCAGGAACATTTTCCATTGATGCCCAATATAGTGATGTGCCTGGGCAACAAACACCTGCAAGGATCAGCACATATACCATTGGTCCTTTCGAAGCTAAACAAAGCGAAAAGGCAAAAGTTAAAGTGAAAGTTCGTCTCAATGTGCATGGAATTGCATCTGTTGACTTGGCAACTCTCCTCGAAGAGGAAGAAGTTGAGGCTTCAGTTTCCAAAGAATCAGCAAGCGAACCTACTAAGATGGATGCTGATGAAGCTCCTGCTGATGCTGCTGCACCTCCCAATGGTAATGATGCTGATGTTAATATGCAAGATGCAAAGGCTAATGCTGATACCCCTGGGGTTGAAAATGGCGTCCCTGAGAATGGAGATAAGCCTGCACAAATGGACGTGGATGATACAAAGGCTTCGAAGAAAAAGGTTAAGAAAACAAATGTTCCTGTTGCTGAGTTAGTTTATGGAGCAATGGCACCTGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTATGAAATGGCTTTGCAAGATCGTGTAATGGAAGAAACAAAGGACAAGAAAAATGCAGTAGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGACAAATACCATGAGTTTGTCATTGCTTCGGAGAGGGAAGGTCTTACCGCTAAACTTCAGGAGGTGGAAGATTGGCTATATGAGGACGGTGAAGATGAAACTAAAGGGGTATATATTGCAAAACTTGAAGAGCTCAAAAAGCAAGGTGACCCAATCGAAGAGCGTTACAAAGAATACGAGGAGAGGGGTGCAATAATTGATCAGTTCAACTATTGTATAGCTAGTTACAGAGAAGCTGCAATGTCAACTGATCCCAAATTTGATCACATTGACATTAACGAGAAACAGAAGGTCTTAAATGAATGCGTTGAAGCTGAAAACTGGCTTAGGGAGAAGAAGCTGCAGCAGGACTCACTTCCAAAATATGCCAACCCTGTTCTCTTGGTAGCTGAGATAAGAAAGAAAGCTGAGGCTGTTGATAGGTTCTGCAAGCCGATTATGACAAAACCAAAGCCGGCCAAGCCAGCTGCTCCACAAGCACCACCAAGCCCAGCTTCTCCGGGTTCTGAGCAGCAGCAACCTCAGGCAGATGAGAATGCCAGCACCAATGAGAATACCGGAGATGATGCTAATCAAGCTTCATCAGCATCCACTGAACCAATGGAGACTGATAAGTCAGAGAATGCCGGTTCTGCATAA 2556 0.4397 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAASTMMNPKNSVSQIKRLIGKKFSDPDLQSDLKSLPYSVSEGPDGYPLIHARYLGEVKTFTPTQVFAMMLSNMKEIATKNLNAAVHDCCIAIPVYFTDLQRRAVLDAATIAGLHPLRLLHETTATALAYGIYKTDLSETDPLNVAFVDIGHASMQVCIAGFKKGQLKVLAHSFDRSLGGRDFDEVLFHHFAGKFKEEYKIDVLQNARACLRLRAACEKMKKMLSANPVVPLNIECLMDEKDVKGIMKRDEFEELSLPILERVKGPLERALAEAGLSVDDIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVAKGAALQCAILSPTFKVREFQVNESFPFAISLAWKGSAPDAQDSGPDNQQSSLVFPKGNPIPSIKALTFYRSGTFSIDAQYSDVPGQQTPARISTYTIGPFEAKQSEKAKVKVKVRLNVHGIASVDLATLLEEEEVEASVSKESASEPTKMDADEAPADAAAPPNGNDADVNMQDAKANADTPGVENGVPENGDKPAQMDVDDTKASKKKVKKTNVPVAELVYGAMAPVDVQKAVEKEYEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYHEFVIASEREGLTAKLQEVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEERYKEYEERGAIIDQFNYCIASYREAAMSTDPKFDHIDINEKQKVLNECVEAENWLREKKLQQDSLPKYANPVLLVAEIRKKAEAVDRFCKPIMTKPKPAKPAAPQAPPSPASPGSEQQQPQADENASTNENTGDDANQASSASTEPMETDKSENAGSA 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00310 851 FunFam Heat shock 70 kDa protein 4 595 705 - -
Trre8g00310 851 Gene3D - 186 360 - -
Trre8g00310 851 MobiDBLite consensus disorder prediction 808 851 - -
Trre8g00310 851 MobiDBLite consensus disorder prediction 790 807 - -
Trre8g00310 851 Coils Coil 681 701 - -
Trre8g00310 851 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 592 IPR029047 -
Trre8g00310 851 Gene3D - 5 374 - -
Trre8g00310 851 FunFam Heat shock 70 kDa protein 4 230 313 - -
Trre8g00310 851 FunFam Heat shock 70 kDa protein 4 110 205 - -
Trre8g00310 851 Pfam Hsp70 protein 3 696 IPR013126 GO:0005524|GO:0140662
Trre8g00310 851 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 628 IPR029047 -
Trre8g00310 851 CDD HSPA4_like_NDB 2 381 - -
Trre8g00310 851 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 597 695 IPR029048 -
Trre8g00310 851 PRINTS 70kDa heat shock protein signature 363 383 - -
Trre8g00310 851 PRINTS 70kDa heat shock protein signature 332 348 - -
Trre8g00310 851 PRINTS 70kDa heat shock protein signature 30 42 - -
Trre8g00310 851 PRINTS 70kDa heat shock protein signature 2 15 - -
Trre8g00310 851 PRINTS 70kDa heat shock protein signature 140 160 - -
Trre8g00310 851 FunFam Heat shock 70 kDa protein 4 1 79 - -
Trre8g00310 851 Gene3D - 38 113 - -
Trre8g00310 851 FunFam Heat shock 70 kDa protein 14 387 593 - -
Trre8g00310 851 MobiDBLite consensus disorder prediction 507 577 - -
Trre8g00310 851 PANTHER HSC70CB, ISOFORM G-RELATED 1 843 - -
Trre8g00310 851 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 713 795 IPR029048 -
Trre8g00310 851 Gene3D Actin; Chain A, domain 4 230 313 - -
Trre8g00310 851 MobiDBLite consensus disorder prediction 507 523 - -
Trre8g00310 851 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Trre8g00310 851 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Trre8g00310 851 MobiDBLite consensus disorder prediction 786 851 - -
Trre8g00310 851 FunFam Heat shock 70 kDa protein 4 38 113 - -
Trre8g00310 851 Gene3D - 597 704 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00310 Trre-Chr8 2256940 2260932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00310 4 438 Calmodulin-binding Proteins AT1G16030 34.932 9.16e-86 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00310 K09489 - gmx:100778196 1323.15