Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00291 ATGGCAAGAGAAGGTCTTGGACTTGAAATAACTGAGCTAAGGTTGGGTTTACCATGTGGTGAACCACAAAAGAATGAGAAGAAGAGGATGTTCTCCGAGATTGACGGTGTCGGAGAGGAAAATGGTGGTTCGGATGATCGGAAAATTACCGAGAAGAAGAATCAAGTTGTCGGGTGGCCTCCGGTGTGTTCGTATCGGAAGAAGAACATGAATGAAGGTTCTAAAATGTACATGAAGGTTAGCATGGATGGTGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTGGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAAGAAGCATTGAAGGATGCAGACAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGTAA 444 0.4437 MAREGLGLEITELRLGLPCGEPQKNEKKRMFSEIDGVGEENGGSDDRKITEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00291 147 ProSiteProfiles PB1 domain profile. 75 147 IPR000270 GO:0005515
Trre8g00291 147 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 146 IPR003311 GO:0005634|GO:0006355
Trre8g00291 147 Gene3D - 69 147 - -
Trre8g00291 147 SUPERFAMILY CAD & PB1 domains 68 147 - -
Trre8g00291 147 Pfam AUX/IAA family 44 147 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00291 Trre-Chr8 2073548 2075664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00291 44 146 B3 DNA Binding Superfamily AT4G23980 36.190 5.37e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre8g00291 AUX_IAA 7.2e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00291 K14484 - gmx:547784 234.187