Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00290 ATGGCAAGAGAAGGTCTTGGACTTGAAATAACTGAGCTAAGGTTGGGTTTACCATGTGGTGAACCACAAAAGAATGAGAAGAAGAGGATGTTCTCCGAGATTGACGGTGTCGGAGAGGAAAATGGTGGTTCGGATGATCGGAAAATTACCGAGAAGAAGAATCAAGTTGTCGGGTGGCCTCCGGTGTGTTCGTATCGGAAGAAGAACATGAATGAAGGTTCTAAAATGTACATGAAGGTTAGCATGGATGGTGCTCCTTACTTGCGTAAGATTGATCTTGGTTTGCATAAGGGATACTTGGAGTTGGCTTTGGCTTTGGAGAAGCTCTTTGGTTGTTGTGGAATTGAAGAAGCATTGAAGGATGCAGACAATTGTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGGTCAGATGCAAAGGGGTTTGGTCTGCAACCAAAAGGATCTTTAAAGAGATTCATATAG 540 0.437 MAREGLGLEITELRLGLPCGEPQKNEKKRMFSEIDGVGEENGGSDDRKITEKKNQVVGWPPVCSYRKKNMNEGSKMYMKVSMDGAPYLRKIDLGLHKGYLELALALEKLFGCCGIEEALKDADNCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKRFI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00290 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 165 IPR003311 GO:0005634|GO:0006355
Trre8g00290 179 FunFam Auxin-responsive protein 70 171 - -
Trre8g00290 179 Pfam AUX/IAA family 45 167 IPR033389 -
Trre8g00290 179 ProSiteProfiles PB1 domain profile. 75 163 IPR000270 GO:0005515
Trre8g00290 179 Gene3D - 69 172 - -
Trre8g00290 179 SUPERFAMILY CAD & PB1 domains 68 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00290 Trre-Chr8 2070977 2075664 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00290 44 165 B3 DNA Binding Superfamily AT4G23980 34.677 2.73e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Trre8g00290 AUX_IAA 4.5e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00290 K14484 - gmx:547784 291.967