Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre8g00287 | ATGGCCGGTGGTGGTGGTGGTAGTTCACTGTCAGGGTTGCAAGATCATGTGAAGTTAGCTAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTGTTGCACAAATCAACAGGCATCTAAACAGTGTTGATGACCCTTTAATTCGTGCGAAATGGATGAATGTTAAGAAAGCTCTTTCTGAGGAAACTGAAGTTGTTAAACAACTAGATGCAGATAAAAGGGCATTTAAAGATAACCCTATTGGAAGACGTCCTCCGTCACCTCCAATTTCTACTAAATCTTCATTTGTTTTTCAGCCATCAGATGAGTATCCTACTTCATCTGGTTCTTCCTTTGACGATCCCGATGTGTGGAGGCCGCCTAGTAGAGATACTAGAAGACCCGCAAGGGGTGGTCAAGTGGGCAATCGGATATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGACAAGTGCAGCTGGCCGTGGTGCAAAGGCTGGTGGTGTTAAAAGCAAGGTTAACTCAGGGGCCCGAACATCAACTCCCGTAAAGAAAGGCGGTGTTTCTGGAAAGTCTAGCAAGACAGACACAACTAATGGCGATGCTGAAGATGGGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTGAATTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCCGGAGTGAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCTTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACACTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATCGATTCGCTATGCAATGCTAGAGGGGCTTCTGGAGAGCACGAATCATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTCGATGGTGTAAGCAACACTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAATTGATCCGGATTAATTTGAAGACCGTTGAGGTGGCCGCTGATGTCAACATAGATGAAGTGGCTCGCAGAACTGATGGCTATAGTGGAGACGATTTGACAAATGTCTGCCGTGATGCTTCCTTAAACGGAATGAGGAGGAAGATAGCAGGAAAGACTCGAGATGAAATCAAGAATATGTCTAAGGATGAAATTTCAAAAGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTAGTAAAGGTCCAACGAAGTGTTTCTCCGTCCGATATTGAACGCCATGAGAAATGGTTTCATGAATTTGGATCAGCATAA | 1575 | 0.4375 | MAGGGGGSSLSGLQDHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPSDEYPTSSGSSFDDPDVWRPPSRDTRRPARGGQVGNRISQQDSKWARGATTKTSAAGRGAKAGGVKSKVNSGARTSTPVKKGGVSGKSSKTDTTNGDAEDGKSNRVQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSPSDIERHEKWFHEFGSA | 524 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre8g00287 | 524 | MobiDBLite | consensus disorder prediction | 95 | 120 | - | - | |
Trre8g00287 | 524 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 236 | 521 | IPR027417 | - | |
Trre8g00287 | 524 | Gene3D | - | 234 | 514 | IPR027417 | - | |
Trre8g00287 | 524 | FunFam | Katanin p60 ATPase-containing subunit A1 | 8 | 84 | - | - | |
Trre8g00287 | 524 | Hamap | Meiotic spindle formation protein mei-1 [mei-1]. | 11 | 524 | IPR028596 | GO:0008017|GO:0008568|GO:0051013 | |
Trre8g00287 | 524 | MobiDBLite | consensus disorder prediction | 176 | 199 | - | - | |
Trre8g00287 | 524 | MobiDBLite | consensus disorder prediction | 141 | 157 | - | - | |
Trre8g00287 | 524 | ProSitePatterns | AAA-protein family signature. | 385 | 404 | IPR003960 | GO:0005524|GO:0016887 | |
Trre8g00287 | 524 | Pfam | ATPase family associated with various cellular activities (AAA) | 276 | 413 | IPR003959 | GO:0005524|GO:0016887 | |
Trre8g00287 | 524 | FunFam | Katanin p60 ATPase-containing subunit A1 | 234 | 402 | - | - | |
Trre8g00287 | 524 | Pfam | Vps4 C terminal oligomerisation domain | 477 | 522 | IPR015415 | - | |
Trre8g00287 | 524 | MobiDBLite | consensus disorder prediction | 200 | 214 | - | - | |
Trre8g00287 | 524 | SMART | AAA_5 | 272 | 415 | IPR003593 | GO:0016887 | |
Trre8g00287 | 524 | CDD | Kp60-NTD | 14 | 78 | - | - | |
Trre8g00287 | 524 | FunFam | Katanin p60 ATPase-containing subunit A1 | 414 | 500 | - | - | |
Trre8g00287 | 524 | Gene3D | - | 8 | 84 | - | - | |
Trre8g00287 | 524 | Pfam | AAA+ lid domain | 435 | 476 | IPR041569 | - | |
Trre8g00287 | 524 | Gene3D | - | 414 | 500 | - | - | |
Trre8g00287 | 524 | PANTHER | AAA DOMAIN-CONTAINING | 29 | 523 | - | - | |
Trre8g00287 | 524 | MobiDBLite | consensus disorder prediction | 83 | 217 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre8g00287 | Trre-Chr8 | 2023368 | 2027300 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre8g00287 | 228 | 516 | Calmodulin-binding Proteins | AT3G56690 | 39.933 | 8.21e-51 | 185 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre8g00287 | K07767 | - | zju:112489859 | 888.256 |