Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00287 ATGGCCGGTGGTGGTGGTGGTAGTTCACTGTCAGGGTTGCAAGATCATGTGAAGTTAGCTAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTGTTGCACAAATCAACAGGCATCTAAACAGTGTTGATGACCCTTTAATTCGTGCGAAATGGATGAATGTTAAGAAAGCTCTTTCTGAGGAAACTGAAGTTGTTAAACAACTAGATGCAGATAAAAGGGCATTTAAAGATAACCCTATTGGAAGACGTCCTCCGTCACCTCCAATTTCTACTAAATCTTCATTTGTTTTTCAGCCATCAGATGAGTATCCTACTTCATCTGGTTCTTCCTTTGACGATCCCGATGTGTGGAGGCCGCCTAGTAGAGATACTAGAAGACCCGCAAGGGGTGGTCAAGTGGGCAATCGGATATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGACAAGTGCAGCTGGCCGTGGTGCAAAGGCTGGTGGTGTTAAAAGCAAGGTTAACTCAGGGGCCCGAACATCAACTCCCGTAAAGAAAGGCGGTGTTTCTGGAAAGTCTAGCAAGACAGACACAACTAATGGCGATGCTGAAGATGGGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTGAATTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCCGGAGTGAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCTTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACACTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATCGATTCGCTATGCAATGCTAGAGGGGCTTCTGGAGAGCACGAATCATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTCGATGGTGTAAGCAACACTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAATTGATCCGGATTAATTTGAAGACCGTTGAGGTGGCCGCTGATGTCAACATAGATGAAGTGGCTCGCAGAACTGATGGCTATAGTGGAGACGATTTGACAAATGTCTGCCGTGATGCTTCCTTAAACGGAATGAGGAGGAAGATAGCAGGAAAGACTCGAGATGAAATCAAGAATATGTCTAAGGATGAAATTTCAAAAGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTAGTAAAGGTCCAACGAAGTGTTTCTCCGTCCGATATTGAACGCCATGAGAAATGGTTTCATGAATTTGGATCAGCATAA 1575 0.4375 MAGGGGGSSLSGLQDHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPSDEYPTSSGSSFDDPDVWRPPSRDTRRPARGGQVGNRISQQDSKWARGATTKTSAAGRGAKAGGVKSKVNSGARTSTPVKKGGVSGKSSKTDTTNGDAEDGKSNRVQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSPSDIERHEKWFHEFGSA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00287 524 MobiDBLite consensus disorder prediction 95 120 - -
Trre8g00287 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 521 IPR027417 -
Trre8g00287 524 Gene3D - 234 514 IPR027417 -
Trre8g00287 524 FunFam Katanin p60 ATPase-containing subunit A1 8 84 - -
Trre8g00287 524 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 11 524 IPR028596 GO:0008017|GO:0008568|GO:0051013
Trre8g00287 524 MobiDBLite consensus disorder prediction 176 199 - -
Trre8g00287 524 MobiDBLite consensus disorder prediction 141 157 - -
Trre8g00287 524 ProSitePatterns AAA-protein family signature. 385 404 IPR003960 GO:0005524|GO:0016887
Trre8g00287 524 Pfam ATPase family associated with various cellular activities (AAA) 276 413 IPR003959 GO:0005524|GO:0016887
Trre8g00287 524 FunFam Katanin p60 ATPase-containing subunit A1 234 402 - -
Trre8g00287 524 Pfam Vps4 C terminal oligomerisation domain 477 522 IPR015415 -
Trre8g00287 524 MobiDBLite consensus disorder prediction 200 214 - -
Trre8g00287 524 SMART AAA_5 272 415 IPR003593 GO:0016887
Trre8g00287 524 CDD Kp60-NTD 14 78 - -
Trre8g00287 524 FunFam Katanin p60 ATPase-containing subunit A1 414 500 - -
Trre8g00287 524 Gene3D - 8 84 - -
Trre8g00287 524 Pfam AAA+ lid domain 435 476 IPR041569 -
Trre8g00287 524 Gene3D - 414 500 - -
Trre8g00287 524 PANTHER AAA DOMAIN-CONTAINING 29 523 - -
Trre8g00287 524 MobiDBLite consensus disorder prediction 83 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00287 Trre-Chr8 2023368 2027300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00287 228 516 Calmodulin-binding Proteins AT3G56690 39.933 8.21e-51 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00287 K07767 - zju:112489859 888.256