Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00286 ATGGGCCCACTGGATTCTTCAATTTCAAAACCAGAAAAAGCCCATCAAAACCAAACCAACCAACCAAACACATCTCACTCAGAACAACAACCCAGTTCGGTGAACGGAGAGAAACAGAGAGAGAAGAGAATGGCCGGTGGTGGTGGTGGTAGTTCACTGTCAGGGTTGCAAGATCATGTGAAGTTAGCTAGAGATTATGCTCTTGAAGGTCTCTATGATACTTCTATCATCTTCTTTGATGGTGCTGTTGCACAAATCAACAGGCATCTAAACAGTGTTGATGACCCTTTAATTCGTGCGAAATGGATGAATGTTAAGAAAGCTCTTTCTGAGGAAACTGAAGTTGTTAAACAACTAGATGCAGATAAAAGGGCATTTAAAGATAACCCTATTGGAAGACGTCCTCCGTCACCTCCAATTTCTACTAAATCTTCATTTGTTTTTCAGCCATCAGATGAGTATCCTACTTCATCTGGTTCTTCCTTTGACGATCCCGATGTGTGGAGGCCGCCTAGTAGAGATACTAGAAGACCCGCAAGGGGTGGTCAAGTGGGCAATCGGATATCTCAACAAGATAGTAAATGGGCTCGAGGTGCTACAACAAAGACAAGTGCAGCTGGCCGTGGTGCAAAGGCTGGTGGTGTTAAAAGCAAGGTTAACTCAGGGGCCCGAACATCAACTCCCGTAAAGAAAGGCGGTGTTTCTGGAAAGTCTAGCAAGACAGACACAACTAATGGCGATGCTGAAGATGGGAAGTCAAATAGGGTACAATATGAAGGTCCTGACCCTGAATTGGCCGAAATGCTTGAAAGGGATGTGTTAGAAACCTCTCCCGGAGTGAGATGGGATGATGTTGCAGGACTTACTGAAGCAAAAAGGCTTTTAGAAGAAGCTGTTGTGCTTCCTTTATGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTTATGTTTGGTCCTCCGGGAACTGGAAAGACACTTCTTGCTAAGGCAGTTGCTACTGAATGTGGGACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAGAGTGAGCGAATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATCGATTCGCTATGCAATGCTAGAGGGGCTTCTGGAGAGCACGAATCATCCCGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTCGATGGTGTAAGCAACACTGCAACAAATGAAGATGGTAGCCGAAAACTAGTAATGGTCTTGGCAGCTACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGAGAATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAATTGATCCGGATTAATTTGAAGACCGTTGAGGTGGCCGCTGATGTCAACATAGATGAAGTGGCTCGCAGAACTGATGGCTATAGTGGAGACGATTTGACAAATGTCTGCCGTGATGCTTCCTTAAACGGAATGAGGAGGAAGATAGCAGGAAAGACTCGAGATGAAATCAAGAATATGTCTAAGGATGAAATTTCAAAAGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTAGTAAAGGTCCAACGAAGTGTTTCTCCGTCCGATATTGAACGCCATGAGAAATGGTTTCATGAATTTGGATCAGCATAA 1704 0.4378 MGPLDSSISKPEKAHQNQTNQPNTSHSEQQPSSVNGEKQREKRMAGGGGGSSLSGLQDHVKLARDYALEGLYDTSIIFFDGAVAQINRHLNSVDDPLIRAKWMNVKKALSEETEVVKQLDADKRAFKDNPIGRRPPSPPISTKSSFVFQPSDEYPTSSGSSFDDPDVWRPPSRDTRRPARGGQVGNRISQQDSKWARGATTKTSAAGRGAKAGGVKSKVNSGARTSTPVKKGGVSGKSSKTDTTNGDAEDGKSNRVQYEGPDPELAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNTATNEDGSRKLVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALVKVQRSVSPSDIERHEKWFHEFGSA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00286 567 FunFam Katanin p60 ATPase-containing subunit A1 51 127 - -
Trre8g00286 567 SMART AAA_5 315 458 IPR003593 GO:0016887
Trre8g00286 567 MobiDBLite consensus disorder prediction 10 34 - -
Trre8g00286 567 ProSitePatterns AAA-protein family signature. 428 447 IPR003960 GO:0005524|GO:0016887
Trre8g00286 567 Pfam Vps4 C terminal oligomerisation domain 520 565 IPR015415 -
Trre8g00286 567 Gene3D - 277 557 IPR027417 -
Trre8g00286 567 Pfam AAA+ lid domain 478 519 IPR041569 -
Trre8g00286 567 CDD Kp60-NTD 57 121 - -
Trre8g00286 567 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 54 567 IPR028596 GO:0008017|GO:0008568|GO:0051013
Trre8g00286 567 MobiDBLite consensus disorder prediction 1 56 - -
Trre8g00286 567 MobiDBLite consensus disorder prediction 219 242 - -
Trre8g00286 567 Gene3D - 51 127 - -
Trre8g00286 567 PANTHER AAA DOMAIN-CONTAINING 71 566 - -
Trre8g00286 567 MobiDBLite consensus disorder prediction 138 163 - -
Trre8g00286 567 CDD RecA-like_KTNA1 284 454 - -
Trre8g00286 567 MobiDBLite consensus disorder prediction 184 200 - -
Trre8g00286 567 Pfam ATPase family associated with various cellular activities (AAA) 319 456 IPR003959 GO:0005524|GO:0016887
Trre8g00286 567 MobiDBLite consensus disorder prediction 126 260 - -
Trre8g00286 567 MobiDBLite consensus disorder prediction 243 257 - -
Trre8g00286 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 564 IPR027417 -
Trre8g00286 567 FunFam Katanin p60 ATPase-containing subunit A1 457 543 - -
Trre8g00286 567 Gene3D - 457 543 - -
Trre8g00286 567 FunFam Katanin p60 ATPase-containing subunit A1 277 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00286 Trre-Chr8 2023368 2027429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00286 271 559 Calmodulin-binding Proteins AT3G56690 39.933 2.49e-50 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00286 K07767 - zju:112489859 888.256