Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00282 ATGTCTCTTGATCACACGCCGTCTTCCATTATGAATTCTATTGCCGAAGGGGCTTGCACATACTGGTCCAAGCCATTGGATGAGAATCAATTCAAGACCATGTGGCAGCATGTTGTACGAAACACTTTGAGCGAAAGTCAGCTACATGTTTTACGGAAGGCTTTGAGCGAAAGTCCTCAAACCTTGGAGGTTAAAGGCCATAAAAAGCGAGGAAGAGAAGATATTGATGTACCAAAACCACCTCTTGCAAAGAAAACCCGTTTGTCATGGACACCTGAATTGAACGAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAATGCAGTGCCGAAAGAAATTCTGAAACGGATGAACTTTCCTGGTTTGACATCAGGGCATGTAGCTAGCCATTTACAGAAGTATAGAAACTATTTGAGAGGTGGAATCAGAAAGTCAAAGTTGAGTGGATTTGATTTTGAAGGTCACGACAAAATTCGTACACAACAGCATTGCACTGAAATTGGCGAATCCAACATTTATTTTTGA 531 0.4143 MSLDHTPSSIMNSIAEGACTYWSKPLDENQFKTMWQHVVRNTLSESQLHVLRKALSESPQTLEVKGHKKRGREDIDVPKPPLAKKTRLSWTPELNEQFLSAVNQLGVNNAVPKEILKRMNFPGLTSGHVASHLQKYRNYLRGGIRKSKLSGFDFEGHDKIRTQQHCTEIGESNIYF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00282 176 MobiDBLite consensus disorder prediction 62 80 - -
Trre8g00282 176 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 63 166 IPR044841 GO:0003700|GO:0006355
Trre8g00282 176 MobiDBLite consensus disorder prediction 59 80 - -
Trre8g00282 176 Pfam Myb-like DNA-binding domain 87 137 IPR001005 -
Trre8g00282 176 Gene3D - 82 142 - -
Trre8g00282 176 FunFam Two-component response regulator 82 142 - -
Trre8g00282 176 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 141 IPR017930 -
Trre8g00282 176 NCBIfam myb-like DNA-binding domain, SHAQKYF class 85 138 IPR006447 GO:0003677
Trre8g00282 176 SUPERFAMILY Homeodomain-like 83 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00282 Trre-Chr8 2007721 2008543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00282 1 165 Response Regulator Gene Family AT2G01760 35.079 9.48e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g00282 Myb_DNA-binding 1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00282 - - tpra:123923208 232.646