Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00260 ATGGAGTGCTTAAAATCACCTTTTAAAGGAATTGTTAGTGATATAAGAGGAAGACCACAATGCTATAAAGATGATTGGACTTGCACTCTTCGTTTCAATAATGATAGGATATTGGCTCCAACTACCTATATTTTCTTTGCTTCTGCTTTACCGGTTATTGCTTTCGGCGAACAGCTGAATCGAGACACAGATGGAAGATTGAGCACAGTTGAAACACTAGCTTCTACAGCCATTTGTGGAATCATACATTCAATTATTGGAGGCCAACCACTTCTTATTGTAGGAGTTGCAGAACCCACAATCATCATGTATACCTACTTGTACAACTTTGCCAAAAATCAGGATGGCCTTGGACAAGAACTTTTTTTGGCTTGGGCTGGATGGGTTTGTGCTATTAAGGGAATGATAAAAGAGTTTAGTGCTCCTAAAAATGAAAACTCAATATTAGAGCACAACCAATTTCATTGGCTCTATGTGAATGGCTTATTATGA 492 0.3801 MECLKSPFKGIVSDIRGRPQCYKDDWTCTLRFNNDRILAPTTYIFFASALPVIAFGEQLNRDTDGRLSTVETLASTAICGIIHSIIGGQPLLIVGVAEPTIIMYTYLYNFAKNQDGLGQELFLAWAGWVCAIKGMIKEFSAPKNENSILEHNQFHWLYVNGLL 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00260 163 Gene3D Helical hairpin bin 18 61 - -
Trre8g00260 163 PANTHER ANION EXCHANGE PROTEIN 5 130 IPR003020 GO:0005452|GO:0006820|GO:0016020
Trre8g00260 163 Pfam HCO3- transporter family 7 128 IPR011531 GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00260 Trre-Chr8 1876259 1878532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00260 1 163 Antiporters AT1G74810 52.451 4.08e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00260 K24194 - gmx:100811184 239.965