Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00231 ATGAACTCAAACGACACAAGTCTTGATCAAATTGGTACATGTTCTAATAAGGTTCGAGTTTCAGGAAATTCAAGAAAAAACATTGTTGGTGTTACTAAAAGGAAGAGTGGAAAGTATGCCGTCAAGGTATACGATCGTATATGGAAAAAATATTTGTGGTTAGGGACTTTTGATACGGAAGAAGAAGCTTCAGTTGTGTACTTGTCCAAGAAAACAGAGTTGGAGGAAGAATTGCATGCAAGTGTTATTAAGGCTGCCGGTAAGAGAACCTCAAAATATGTTGGGGTTTGGAGGAGGGACAGTGGGAAGTTTGCTGCTCATATTCGAGACCCCATAAGGAAGAAAAAGTTGTACTTGGGTTCCTTTGTATCTGAGGAAGAAGCAGCGGAAGCCTATTTGGCCAAGAAAGCTGAATTGGCTGTGGAAGTTAAGGGCAAAGGAAATCTGTGTATGATTTCACCCGTATAG 468 0.406 MNSNDTSLDQIGTCSNKVRVSGNSRKNIVGVTKRKSGKYAVKVYDRIWKKYLWLGTFDTEEEASVVYLSKKTELEEELHASVIKAAGKRTSKYVGVWRRDSGKFAAHIRDPIRKKKLYLGSFVSEEEAAEAYLAKKAELAVEVKGKGNLCMISPV 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00231 155 SUPERFAMILY DNA-binding domain 28 74 IPR016177 GO:0003677
Trre8g00231 155 SMART rav1_2 27 81 IPR001471 GO:0003700|GO:0006355
Trre8g00231 155 SMART rav1_2 92 148 IPR001471 GO:0003700|GO:0006355
Trre8g00231 155 Gene3D AP2/ERF domain 91 145 IPR036955 GO:0003700|GO:0006355
Trre8g00231 155 Gene3D AP2/ERF domain 29 78 IPR036955 GO:0003700|GO:0006355
Trre8g00231 155 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 90 139 - -
Trre8g00231 155 ProSiteProfiles AP2/ERF domain profile. 27 86 IPR001471 GO:0003700|GO:0006355
Trre8g00231 155 CDD AP2 26 67 IPR001471 GO:0003700|GO:0006355
Trre8g00231 155 ProSiteProfiles AP2/ERF domain profile. 92 132 IPR001471 GO:0003700|GO:0006355
Trre8g00231 155 SUPERFAMILY DNA-binding domain 91 138 IPR016177 GO:0003677
Trre8g00231 155 Pfam AP2 domain 27 63 IPR001471 GO:0003700|GO:0006355
Trre8g00231 155 Pfam AP2 domain 91 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00231 Trre-Chr8 1717489 1717956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00231 30 78 AP2-EREBP Transcription Factor Family AT1G49120 46.939 4.73e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre8g00231 AP2 2.2e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00231 - - sdul:129870187 89.3521