Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00230 ATGGGTGAATTGAAAGATACCGAGGTTTACGAGGAAGAGCTTATCGACTACGAAGAAGAGGATGAAAGGGCTCTTGATTCTACTAAACCCTCTACTGAAACCGTCAAGAAGGGCTACGTTGGCATCCATAGTTCGGGATTTCGGGACTTCCTGTTGAAACCAGAGCTTCTTCGAGCCATTGTAGATTCGGGATTTGAGCATCCTTCAGAAGTGCAACACGAGTGCATCCCTCAAGCAATTTTAGGAATGGATGTCATTTGCCAAGCAAAATCTGGGATGGGAAAGACCGCTGTTTTTGTTCTGTCAACACTTCAGCAAATTGATCCTGTTCCTGGCCAGGTTGCAGCACTTGTCCTTTGCCACACAAGAGAACTAGCTTATCAGATTTGTCACGAAGTTGAAAGATTCAGCACATATCTTCCAGATATAAAAGTTGCTGTTTTCTATGGTGGGGTCAACATCAAGGTTCACAAAGAATTGCTCAAGAATGAGTGTCCCCACATTGTTGTTGGAACACCTGGGAGGATTCTTGCCCTGACTAGAGACAAGGACCTTGGTTTGAAGAATGTGAGGCATTTTATACTTGATGAGTGTGACAAGATGCTGGAATCACTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAATTGACTCCCCATGATAAACAAGTGATGATGTTTTCTGCTACACTCAGCAAAGATATCCGACCTGTTTGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTTGATGATGAGGCCAAATTGACTCTTCATGGTCTTGTTCAGCACTACATTAAATTACAAGAGCCAGAGAAAAATCGTAAGCTGAATGATCTTCTAGATGCTCTTGACTTCAATCAAGTTGTTATATTTGTCAAAAGTGTCAGCAGAGCTGCAGAATTGAACAAGTTGCTTGTTGAGTGTAACTTCCCATCAATATGCATACATTCTGGAATGTCACAAGAAGAAAGATTGAAGCGATACAAGGGCTTCAAAGAGGGGAAGCAAAGGATTCTCGTGGCAACAGATTTAGTAGGAAGGGGGATTGATATTGAACGTGTCAATATAGTCATCAACTATGACATGCCTGATTCTGCTGATACCTATCTTCATAGGGTGGGAAGAGCTGGTAGATTTGGCACCAAGGGGCTTGCAATTACCTTTGTATCTTCAGCTGGTGACTCTGAAGTTCTTAATCAGGTGCAATCTAGGTTTGAGGTTGATATTAAGGAGCTTCCTGAACAAATTGACACCTCCACATACAGTAAGATGCTTTTTCTCTTACTACCTTGTGGCTTAAATCATTCTGAGTAG 1320 0.4167 MGELKDTEVYEEELIDYEEEDERALDSTKPSTETVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKDIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDTSTYSKMLFLLLPCGLNHSE 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00230 439 CDD SF2_C_DEAD 262 391 - -
Trre8g00230 439 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 400 - -
Trre8g00230 439 SMART ultradead3 64 265 IPR014001 -
Trre8g00230 439 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 249 IPR014001 -
Trre8g00230 439 CDD DEADc_DDX39 44 251 - -
Trre8g00230 439 Gene3D - 41 257 IPR027417 -
Trre8g00230 439 SMART helicmild6 301 382 IPR001650 -
Trre8g00230 439 Pfam Helicase conserved C-terminal domain 275 382 IPR001650 -
Trre8g00230 439 FunFam DEAD-box ATP-dependent RNA helicase 258 426 - -
Trre8g00230 439 Gene3D - 258 426 IPR027417 -
Trre8g00230 439 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Trre8g00230 439 FunFam DEAD-box ATP-dependent RNA helicase 56-like 33 251 - -
Trre8g00230 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 398 IPR027417 -
Trre8g00230 439 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 277 422 IPR001650 -
Trre8g00230 439 Pfam DEAD/DEAH box helicase 70 235 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00230 Trre-Chr8 1702282 1709275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00230 1 423 Eukaryotic Initiation Factors Gene Family AT5G11200 82.581 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00230 K12812 - gmx:100785358 799.275