Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00229 ATGGTGAAATCGAAGAAATTCAGAGGTGTTAGGCAACGCCATTGGGGCTCTTGGGTCTCCGAGATTCGTCATCCTTTATTGAAAAGGAGGGTGTGGCTAGGAACATTTGAGACAGCTGAAGAAGCAGCTAGAGCATATGATGAAGCAGCAATTTTAATGAGTGGAAGAAATGCAAAAACAAATTTCCCTATTTCTGATAACAAGCCAATAACAAATATCAACAACAATAACCAAAAATCTTTTGCAACTTCCTCTTCAAATTCTACCACAACTACTAATACATCATTATCTGCAATTCTAAGTGCAAAGCTTAGGAAATGTTGCAAATCACCTTCACCTTCACTTACTTGTCTAAGGCTTGACACTGAGAATTCTCACTTTGGAGTGTGGCAAAAAAGAGCGGGTCCTCGTTCGGACTCCAATTGGATCATGATGGTTGAATTGGAAAGGAAGAAGAAAGAAGAAGAAGACGGAGAAATTGTGCCTAGTTCGGATTCGGAAATATTACCTCCCATTGTTATTGATAATGATGAATCAGAGAAGGCCGTAAAACCGGAAAATGAAGAAGATGAAGGAAATGATAATAACAATGGATTGGATGAAGAACAAAGAATTGCACTTCAAATGATAGAAGAACTTCTTAATCATTAA 651 0.3794 MVKSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPISDNKPITNINNNNQKSFATSSSNSTTTTNTSLSAILSAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAGPRSDSNWIMMVELERKKKEEEDGEIVPSSDSEILPPIVIDNDESEKAVKPENEEDEGNDNNNGLDEEQRIALQMIEELLNH 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00229 216 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Trre8g00229 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Trre8g00229 216 MobiDBLite consensus disorder prediction 68 92 - -
Trre8g00229 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 170 - -
Trre8g00229 216 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Trre8g00229 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Trre8g00229 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Trre8g00229 216 MobiDBLite consensus disorder prediction 153 204 - -
Trre8g00229 216 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Trre8g00229 216 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Trre8g00229 216 MobiDBLite consensus disorder prediction 177 191 - -
Trre8g00229 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Trre8g00229 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00229 Trre-Chr8 1690283 1691963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00229 1 215 AP2-EREBP Transcription Factor Family AT1G15360 58.559 7.11e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre8g00229 AP2 9.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00229 - - gmx:100785898 267.314