Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00227 ATGATCAGGCAAAACATTGAGGAGACTGTTGGTATTGGAAAGGGAGTTACTCAACTCTATGCTACCATTGATTTGGACAAAGCAAGAGCCGGAAGGACAAGGATTATTGAAAATGAACATACTAATCCAAAATGGTATGAGTCGTTTCACATTTACTGTGCTCATTTGGCTTCAAATATCATATTTACTGTGAAAGATGATAATCCTATTGGAGCGACTTTAATTGGAAGAGCTTATGTGCCTGTCGAGGAGGTCTTGGGTGGTGAGGAAATAGATAGATGGGTGGAAATCTTGGATGAGGAAAGAAATCCGATAAAAGAGGGTTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTTACAAAAGACCGAAGCTGGGCTCGAGGCATTCAAAGTGCTAAATTTCCTGGAGTTCCGTATACTTTCTTCTCGCAGAGGCAAGGATGTAAGGTATCTCTTTACCAAGATGCTCATGTGCCGGATAACTTTGTCCCTAAAATATCACTCTCTGGTGGCAAGACTTACCAGCCTCATAGGTGTTGGGAGGATATTTTCGATGCAATCACTAATGCTAAGCATTTGATATACATTACTGGTTGGTCTGTTTATACCGAAATTTCGTTGGTGAGGGATTCTAGGAGGCCAAAGGCCGGGGGAGATGCAACACTTGGTGAGCTTCTCAAAAAAAAGGCTAGCGAAGGTGTTAGGGTTTTGATGCTGGTTTGGGATGATAGAACATCGGTCGGTTTGTTGAAAAAGGATGGATTGATGGCTACTCATGACGAAGAAACCGCAAATTTCTTCGAGGGCACTGATGTCCATTGTGTTTTATGCCCCCGCAATCCTGATGATGGTGGTAGCGTCATTCAAGATTTACAAATTTCCACCATGTTTACTCATCACCAAAAGATTGTGGTGGTTGACAGTGAGTTACCTGGTGGAGGGTCAGATAAGCGAAGAATTGTGAGTTTTGTTGGGGGTATTGACCTTTGTGATGGAAGATACGATACTGCGTTCCACTCACTTTTCAGAACCCTTGACACCGCACACCATGATGATTTTCATCAACCTAACTTTCCTGGTGCTGCAATCACAAAAGGTGGTCCAAGGGAACCTTGGCATGACATTCACTCCCGGCTTGAAGGACCAATCGCTTGGGATGTTTTGTTTAACTTTGAACAGCGATGGAGGAAGCAAGGTGAGAAGGATATACTTGTCAATCTGAGAGAGCTTGAAGATTCTATTATTCCCCCATCCCCGGTAACGTTTCCGGATGATCACGAGACATGGAATGTTCAGTTGTTTAGATCTATTGACGGTGGAGCTGCTTTCGGGTTCCCAGAATCTCCCGAAGATGCTGCGAGAGCCGGTCTTGTTAGTGGAAAGGACAATATCATCGATCGTAGCATTCAAGATGCTTATATTAATGCTATTCGACGTGCAAAGAACTTCATCTATATTGAAAATCAGTATTTCCTCGGAAGCTCTTTTGCTTGGAGCGGAGATGATATTAAGCCTGAAGAAATTGGTGCTTTGCATCTAATCCCAAAGGAACTTTCACTTAAGATTGTTAGTAAGATTGAAGCTGAGGAAAAGTTCACCGTGTACGTTGTGGTCCCAATGTGGCCAGAAGGTGTTCCAGAAAGTGCATCAGTTCAAGCAATATTGGACTGGCAGAGGAGAACAATGGAGATGATGTACAAGGATATCATTCAGGCACTCAGGGCCAAGGAAATCGAGGAAGATCCACGGAAATATTTGACGTTCTTCTGCCTTGCTAATCGGGAGGTGAAGAAACAGGGAGAGTATGAGCCTTCTGAACAACCAGAACCCGATTCAGATTATGAGAGAGCACAACAGGCCCGACGTTTCATGATCTATGTTCATACCAAGATGATGATAGTCGATGACGAATACATAATCGTTGGATCTGCCAACATCAACCAAAGATCAATGGACGGTGCGAGAGACTCTGAGATAGCAATGGGAGCTTATCAGCCGCACCATTTGGCTACAAGACAGCCGGCACGTGGTCAGATCCACGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTCACGAATCTTTCCTTCATCCAGAAAGTGAAGAATGTATCAGTAAGGTGAATCAGATTGCTGACAAATATTGGGATCTTTATTCCAATGATTCACTCGAGCATGACCTTCCTGGACACTTGCTTCGCTATCCGATTGGAGTTGCTAGTGAAGGAGATATTACTGAGCTGCCTGGATTTGAATTCTTTCCTGATACCAAGGCTCGCATTCTCGGCGGCAAAGCTGATTACCTCCCTCCTATCCTCACTACTTAG 2337 0.439 MIRQNIEETVGIGKGVTQLYATIDLDKARAGRTRIIENEHTNPKWYESFHIYCAHLASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEIDRWVEILDEERNPIKEGSKIHVKLQYFDVTKDRSWARGIQSAKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKISLSGGKTYQPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKAGGDATLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETANFFEGTDVHCVLCPRNPDDGGSVIQDLQISTMFTHHQKIVVVDSELPGGGSDKRRIVSFVGGIDLCDGRYDTAFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGEKDILVNLRELEDSIIPPSPVTFPDDHETWNVQLFRSIDGGAAFGFPESPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFAWSGDDIKPEEIGALHLIPKELSLKIVSKIEAEEKFTVYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIIQALRAKEIEEDPRKYLTFFCLANREVKKQGEYEPSEQPEPDSDYERAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPHHLATRQPARGQIHGFRMSLWYEHLGMLHESFLHPESEECISKVNQIADKYWDLYSNDSLEHDLPGHLLRYPIGVASEGDITELPGFEFFPDTKARILGGKADYLPPILTT 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00227 778 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 624 651 IPR001736 GO:0003824
Trre8g00227 778 PANTHER PHOSPHOLIPASE D 17 766 IPR015679 -
Trre8g00227 778 SMART pld_4 624 651 IPR001736 GO:0003824
Trre8g00227 778 SMART pld_4 296 334 IPR001736 GO:0003824
Trre8g00227 778 Gene3D C2 domain 5 129 IPR035892 -
Trre8g00227 778 SUPERFAMILY Phospholipase D/nuclease 416 708 - -
Trre8g00227 778 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 334 IPR001736 GO:0003824
Trre8g00227 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 120 IPR035892 -
Trre8g00227 778 Gene3D Endonuclease Chain A 169 414 - -
Trre8g00227 778 ProSiteProfiles C2 domain profile. 1 95 IPR000008 -
Trre8g00227 778 CDD C2_plant_PLD 13 118 - -
Trre8g00227 778 SUPERFAMILY Phospholipase D/nuclease 121 411 - -
Trre8g00227 778 PIRSF PLD_plant 2 778 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre8g00227 778 CDD PLDc_pPLDalpha_2 462 671 - -
Trre8g00227 778 FunFam Phospholipase D delta 171 415 - -
Trre8g00227 778 Pfam Phospholipase D C terminal 697 767 IPR024632 -
Trre8g00227 778 SMART C2_3c 1 94 IPR000008 -
Trre8g00227 778 FunFam Phospholipase D 437 670 - -
Trre8g00227 778 Pfam C2 domain 14 97 IPR000008 -
Trre8g00227 778 Gene3D Endonuclease Chain A 452 673 - -
Trre8g00227 778 Pfam Phospholipase D Active site motif 625 651 IPR001736 GO:0003824
Trre8g00227 778 Pfam Phospholipase D Active site motif 296 334 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00227 Trre-Chr8 1662922 1666301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00227 2 778 Phospholipase D Gene Family (Wang group) AT3G15730 84.190 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00227 K01115 - gmx:100786410 1500.72