Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00179 ATGGAGGATTCATGGGAAAATTTTCATCTTCACACGGAATTGGAATGCGGTGATGATTATTTCATTGAAAATTACAATGATTTTAACATTGACAGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCACTAGAGGAAAGTGAAAAAGGTTCCGTTACCGTTAACGTTAACGGTGGTGATGAGGTTGTTGGAAACATGATGAAAAGTAACAGTTCAAATTCAATCGTGTCTCAAATACAAGAACAACAACAACAAGAACAAGGTTTGAAATCAAAAAAGGTTGTTGTTCCTCGTAGATGTTCTTCACCAACAAGTTACATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTGAACCTTGTGTTAATTTGGAAGTTGGTAAACGTGATTATTGTTCTAATTCTGATTATTCTAAGAAAAATAAAAGGAACCTTGAAAGTAGTGAAAAGGATGAAATTATTATGAAAATAAATAAAAATCAAGGGGTGAAGAAAGCAAGAAGCAGTTCTCAGTGTGTTGATCATATAATGGCAGAGAGAAAAAGGAGACAAGAATTGACTGAGAGATTCATCGCACTTTCAGCCACCATTCCTGGCTTGAGCAAGACAGACAAAGCTTCAATACTTCGAGCAGCAATTGATTATGTTAAACAGCTTCAAGAACGTGTTCATGAGCTAGAAGAGAAACAAGACAAAAATAAACAAAATGGAATTGAGCTCAAATTACTTGACCACGTTGAAAATCTTCAACTCTTTGTCACTGGTACCTGTGTATTGCCATTTGGAAAATCTGCTATGTCCATTACAATTATTGCTCAGATGGGTGATGGGTACAAAGTGACAGTGCATGATCTAGTGAAAAGCATTAGGCAAGTGCTCGTGAAACCTCAAATAAGATGCCAAAGTGATCCGTACTAG 927 0.3603 MEDSWENFHLHTELECGDDYFIENYNDFNIDSDDFLREILLQTPLEESEKGSVTVNVNGGDEVVGNMMKSNSSNSIVSQIQEQQQQEQGLKSKKVVVPRRCSSPTSYILSFDNSTMIPATPEPCVNLEVGKRDYCSNSDYSKKNKRNLESSEKDEIIMKINKNQGVKKARSSSQCVDHIMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQERVHELEEKQDKNKQNGIELKLLDHVENLQLFVTGTCVLPFGKSAMSITIIAQMGDGYKVTVHDLVKSIRQVLVKPQIRCQSDPY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00179 308 Gene3D - 162 239 IPR036638 GO:0046983
Trre8g00179 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Trre8g00179 308 PANTHER BHLH TRANSCRIPTION FACTOR 237 298 - -
Trre8g00179 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 239 IPR036638 GO:0046983
Trre8g00179 308 SMART finulus 179 228 IPR011598 GO:0046983
Trre8g00179 308 Coils Coil 212 239 - -
Trre8g00179 308 Pfam Helix-loop-helix DNA-binding domain 175 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00179 Trre-Chr8 1327963 1331908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00179 137 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 33.028 1.40e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g00179 HLH 9.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00179 - - aprc:113857138 268.085