Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00178 ATGGAGGATTCATGGGAAAATTTTCATCTTCACACGGAATTGGAATGCGGTGATGATTATTTCATTGAAAATTACAATGATTTTAACATTGACAGTGACGATTTTCTTAGAGAGATTCTGTTACAGACACCACTAGAGGAAAGTGAAAAAGGTTCCGTTACCGTTAACGTTAACGGTGGTGATGAGGTTGTTGGAAACATGATGAAAAGTAACAGTTCAAATTCAATCGTGTCTCAAATACAAGAACAACAACAACAAGAACAAGGTTTGAAATCAAAAAAGGTTGTTGTTCCTCGTAGATGTTCTTCACCAACAAGTTACATTTTGTCTTTTGATAATTCAACTATGATACCAGCTACACCTGAACCTTGTGTTAATTTGGAAGTTGGTAAACGTGATTATTGTTCTAATTCTGATTATTCTAAGAAAAATAAAAGGAACCTTGAAAGTAGTGAAAAGGATGAAATTATTATGAAAATAAATAAAAATCAAGGGGTGAAGAAAGCAAGAAGCAGTTCTCAGTGTGTTGATCATATAATGGCAGAGAGAAAAAGGAGACAAGAATTGACTGAGAGATTCATCGCACTTTCAGCCACCATTCCTGGCTTGAGCAAGACAGACAAAGCTTCAATACTTCGAGCAGCAATTGATTATGTTAAACAGCTTCAAGAACAGATTGAAGCAAGAGTTATGGGAAAGGAAGTGCTTATTGAAATTCATTGTGAGAAACAAAATGGAATTGAGCTCAAATTACTTGACCACGTTGAAAATCTTCAACTCTTTGTCACTGGTACCTGTGTATTGCCATTTGGAAAATCTGCTATGTCCATTACAATTATTGCTCAGATGGGTGATGGGTACAAAGTGACAGTGCATGATCTAGTGAAAAGCATTAGGCAAGTGCTCGTGAAACCTCAAATAAGATGCCAAAGTGATCCGTACTAG 945 0.3608 MEDSWENFHLHTELECGDDYFIENYNDFNIDSDDFLREILLQTPLEESEKGSVTVNVNGGDEVVGNMMKSNSSNSIVSQIQEQQQQEQGLKSKKVVVPRRCSSPTSYILSFDNSTMIPATPEPCVNLEVGKRDYCSNSDYSKKNKRNLESSEKDEIIMKINKNQGVKKARSSSQCVDHIMAERKRRQELTERFIALSATIPGLSKTDKASILRAAIDYVKQLQEQIEARVMGKEVLIEIHCEKQNGIELKLLDHVENLQLFVTGTCVLPFGKSAMSITIIAQMGDGYKVTVHDLVKSIRQVLVKPQIRCQSDPY 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00178 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Trre8g00178 314 SMART finulus 179 228 IPR011598 GO:0046983
Trre8g00178 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983
Trre8g00178 314 PANTHER BHLH TRANSCRIPTION FACTOR 57 225 - -
Trre8g00178 314 Gene3D - 162 236 IPR036638 GO:0046983
Trre8g00178 314 Pfam Helix-loop-helix DNA-binding domain 175 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00178 Trre-Chr8 1327963 1331908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00178 104 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 34.661 3.12e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g00178 HLH 9.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00178 - - aprc:113857138 289.656