Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00172 ATGATGAACATTGAAAACTTCTCACACGACCCTACACCAACTCCAACAACCACCAACAGCACCACCTTAAACATTCCGAAACACAACCCACTTCAACAAACATCTCTCGAAGGAATCGCCGCTATTGTAGGGGAACAAATCCTCTACGGACCCCGCAAGGACCACAACACCAAAACGACACAACCCACTTGCGTTTCACACCTCAAAACCAAAACAGAACAAACAAAAAACTACAGAGGAGTTAGAAAACGACCATGGGGAAGATGGTCAGCTGAAATACGCGACAGAATCGGTCGGTGTCGTCACTGGTTAGGAACATTTGATACTGCGGAAGAAGCGGCGCGTGCTTATGACGCGGCAGCTAGGCGTTTGAGAGGTTCTAAAGCAAGAACTAATTTTAAGATACCTTCTGTTTTGCCTATACCATTATCTCCAAACTCGAACGAGTCTTCCTGTTCGAGTTCGGAGAATAATGGTAAGAAAAAAGTTGTGCGTAATAGTGTTAGGAAATGTTGTGTTGTTAATTCTGTTGGAGAGTTGTTTAGTGGTGTGCCTGAAGTTAGAAGAGAAAGAGATTATGGTAATAATAATGGGAATGTTGGATTTAGTGGTGGTACAAATAGTACTGGAATGGTGGTGTAG 642 0.433 MMNIENFSHDPTPTPTTTNSTTLNIPKHNPLQQTSLEGIAAIVGEQILYGPRKDHNTKTTQPTCVSHLKTKTEQTKNYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPIPLSPNSNESSCSSSENNGKKKVVRNSVRKCCVVNSVGELFSGVPEVRRERDYGNNNGNVGFSGGTNSTGMVV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00172 213 CDD AP2 76 135 IPR001471 GO:0003700|GO:0006355
Trre8g00172 213 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Trre8g00172 213 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Trre8g00172 213 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Trre8g00172 213 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 61 158 - -
Trre8g00172 213 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Trre8g00172 213 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Trre8g00172 213 Gene3D AP2/ERF domain 76 135 IPR036955 GO:0003700|GO:0006355
Trre8g00172 213 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Trre8g00172 213 MobiDBLite consensus disorder prediction 1 25 - -
Trre8g00172 213 SUPERFAMILY DNA-binding domain 77 134 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00172 Trre-Chr8 1293640 1294281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00172 7 140 AP2-EREBP Transcription Factor Family AT1G80580 53.731 8.07e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g00172 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00172 - - cam:101490906 238.81