Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00160 ATGGCAACAAGTGGGGGTGCTAATAAGAAGGTTTGTGTTACTGGAGCTGGAGGCTTTGTTGCATCATGGCTTGTTAAACTTCTCCTTTCCAAAGGTTACTCTGTCCATGGAACTATCAGACAACCTGGTAGTAAGAATTATGAACACTTGCTGAGACTTGAGAGAGCTTCTGAGAACCTTACACTTTTCAAAGCAGATATCTTGAATTATGAATCTGTTTACAAAGCAATTGTCGGATGCAGTGCCGTTTTCCATGTTGCTAGTCCTGTACCTTCGACAGTTGTACCAAATCCTGAGGTGGAAGTGATTGAGCCTGCAGTGAAGGGAACTGCTAATGTACTTGAAGCTTGTCTGAAAGCTAAAGTGGAACGCGTCGTCTTTGTATCATCTGGAGCTGCTGTTGCGATCAATCCTAATTTCCCGAAATATAAAGTGATTGACGAGTCTTGTTGGTCTGACAAAGACTACTGCAAAAAAACCGAGAACTGGTATTGTTATGCCAAGACAGAAGCAGAAGAGCAGGCCTTGAATTTCGCGAAAAGAACTGGACTTGATGTTGTAAGCATTTGTCCTACCCTTGTTTTGGGGCCAATTTTACAATCAACTACTAATTTAAGTAGCTTGGTTCTCATCAAACTTTTAAAAGGCTATGATTCATTGAATAATAAGCATCGTTGGATAGTTGACGTACGAGACGTAGTTGATGCAATACTTATGGCTTATGAGAATCATGAGGCAGAAGGGAGATACATATGCACTTCACACACCGTAACGAAACGAGATTTGGTGGAGAAATTGAAAACTATATTTCCAAACTACAAGTACCCTACAAACTTTACCGAGGTCGATGATTACAGAATGCTAACTCTGAGCTCAAAGAAACTGCAAAGTTTAGGCTGGAAATTCAGGCCATTGGACGAAACACTCATCGATTCTGTTAAAAGCTATAAGGAGGCAGGACTACTTCAATCACAATAA 978 0.407 MATSGGANKKVCVTGAGGFVASWLVKLLLSKGYSVHGTIRQPGSKNYEHLLRLERASENLTLFKADILNYESVYKAIVGCSAVFHVASPVPSTVVPNPEVEVIEPAVKGTANVLEACLKAKVERVVFVSSGAAVAINPNFPKYKVIDESCWSDKDYCKKTENWYCYAKTEAEEQALNFAKRTGLDVVSICPTLVLGPILQSTTNLSSLVLIKLLKGYDSLNNKHRWIVDVRDVVDAILMAYENHEAEGRYICTSHTVTKRDLVEKLKTIFPNYKYPTNFTEVDDYRMLTLSSKKLQSLGWKFRPLDETLIDSVKSYKEAGLLQSQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00160 325 FunFam NAD(P)-binding Rossmann-fold superfamily protein 5 323 - -
Trre8g00160 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 317 IPR036291 -
Trre8g00160 325 CDD FR_SDR_e 11 300 - -
Trre8g00160 325 Pfam NAD dependent epimerase/dehydratase family 11 246 IPR001509 -
Trre8g00160 325 Gene3D - 2 325 - -
Trre8g00160 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 10 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00160 Trre-Chr8 1143794 1145874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00160 10 322 Monolignol Biosynthesis Gene Families AT2G33590 59.683 5.97e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00160 - - gmx:100784817 478.789