Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00147 ATGACTACCTCCAACGGCCACCACACCGTTACTATCGCCGCCGGTCAAAATGACAACAACAACAACAACAACAACAACGAAGACGACGATAATCTCCCTCCTTCCAATAACAACCGCCGTGATGATGACGACAAAGACAACGATCAACAAATCGATCCTGATGATCCTTTCGACATTACTCAAACTAAGAATGCTTCTCATGAGACTCTTCGCCGTTGGAGACAAGCAGCACTGGTGCTCAATGCGTCCAGGCGATTTAGATATACTTTGGATTTCAAAGGGGAAGAGGAAAAACAGCAAAAGAAGAGCTTAATTAGAGCTCATGCACAAGTCATAAGAGCTGCACTTCTTTTTAGATTGGCCGGCGAACGTGAGCTTGTGATAAGTCCAGCAGCTACACCCCCACCTCAAACTTCAGTTGGTGACTATGGGGTTGGGCTAGAACAACTTGCTTCGATGTCTAAGGATCAGAATGTTTCTGCTTTACAGCAATACGGAGGGGTTAAAGGCCTATCAAATTTACTAAAATCAAATCCAGATAAGGGAATTAGTGGAGATGATGCTGATCTATTGAAAAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAAGCTTGGCAAGATCTGACTCTCATAATATTGATTATAGCAGCTGCAGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTGAGTGAAGGATGGTACGATGGAGGAAGCATTGCTTTTGCAGTTTTACTTGTTATTGTAGTAACAGCTGTCAGTGATTATCGACAATCTCTGCAATTTCAGAATTTGAATGCAGAGAAACAAAATATACAATTGGAGGTCATTAGAGGTGGGAGAACAATTAAAATATCAATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTAGTAATCACAAGTCACTCACTTGCAATCGATGAATCCAGTATGACGGGTGAAAGCAAGATTGTTCATAAGGATCACAAAGCACCCTTTTTTATGTCTGGCTGCAAAGTAGCAGATGGAGTTGGCGTTATGCTGGTAACTGGTGTTGGTATTAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGACACCGGAGAAGAGACTCCATTACAGGTTCGTTTGAATGGAGTGGCAACTTTTATAGGTATAGTTGGGCTTACTGTTGCTGTTTCAGTGCTTGCAGTCCTCTTGGGCAGATACTTTTCTGGCCACACAAATGATTTAGATGGAAATCCCGAATTTGTTGCCGGAAGGACTAGCATTAGTGATGCAGTTGATGGGGTCATCAAAATTTTTACTATTGCAGTCACAATTGTAGTTGTTGCAGTGCCTGAGGGTCTGCCTTTGGCTGTTACTTTAACCCTGGCATACTCAATGCGCAAAATGATGGCAGATAAAGCCTTGGTACGAAGGTTATCGGCATGCGAAACTATGGGCTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGATGACTGTTGTTGAGGCATATGCTGGGAGAAACAAGCTAAATCCACCGGATGACTCTTCAATGTTGCATCCAGAAGCATTATCTCTGATAAATGAAAGCATTGCACAGAATTCAACTGGAAATGTTTTTTTGTCGAAGGATGGTGGAGAGGTAGAGGTGTCAGGATCACCGACGGAGAAGGCCATTCTGTCATGGGCAGTCAAGTTGGGTATGAATTTTGATCTTATCAGATCTAATTCAACAGTTCTTCACGTCTTTCCATTCAATTCTGAGAAAAAACGAGGTGGTGTTGCTCTGAAGCTGGTGGACTCTGGAGTGCATATACACTGGAAAGGAGCTGCAGAAATAGTTTTAGGAGCATGTACCCAATATCTTGATTCAAACGGTCACTTGCAATCCCTTGAAGAAGAGAAGACTTTTTTCAAGGAGGCTATTGATGACATGGCTGCTCGCAGCTTGCGTTGTGTTGCCATTGCATACAGATCATATGATTTAGACAAAGTTCCATCTAATGAGCAGGATTTAGACCAATGGTCCTTACCCGAAGATGAGCTTATTTTACTTGCTATTGTTGGAATCAAGGATCCTTGTCGCCCTAGTGTCAAAGATGCTGTGAGAGTATGCACTGATGCTGGTGTTAAGGTACGCATGGTTACTGGAGACAACCTTCAAACAGCAAAGGCAATTGCTCTGGAGTGTGGGATACTGGCTTCAATTGAAGAAGCTGTTGAGCCAAATATAATTGAAGGAAAGGTATTTCGGGAGCTATCTGAAAAAGAAAGGGAACAAGTTGCCAAGAAAATCACGGTGATGGGCAGGTCTTCTCCTAACGACAAGCTTTTGCTTGTGCAAGCACTACGTAAAGGAGGTGAAGTGGTTGCTGTCACAGGAGATGGCACCAATGATGCCCCTGCATTACACGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAGGAAAGCTCAGATATTATAATCTTGGATGATAACTTTGCATCAGTTGTAAAGGTTGTCCGCTGGGGCCGCTCTGTATATGCCAATATTCAGAAATTTATCCAGTTCCAGCTTACTGTCAATGTTGCCGCGCTTGTAATAAATGTTGTGGCAGCAATAAGTTCTGGCGATGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTCAACCTTATCATGGACACGCTTGGGGCTCTTGCACTGGCTACCGAACCACCAACAGACCACCTAATGCACCGGTCACCAGTTGGTCGAAGGGAGCCACTTATAACAAATATCATGTGGAGAAACTTGATCGTACAGGCTCTTTATCAAATTGTAGTTCTTCTCGTTCTGAACTTCGCCGGTGAAAGTATTCTACCTAAGCAAGATACTAGAGCCCATAGCTATCAAGTGAAGAATACTTTGATATTCAATGCATTTGTCATGTGCCAAATATTCAATGAGTTCAATGCTCGGAAACCAGATGAAATGAATGTCTTCCGAGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAGTAACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGAAAATTCGCCTCAACAGTGAGGCTTGACTGGAAGCTGTGGCTTGCTTCTGTTTTAATTGGTCTTGTCAGCTGGCCTCTTGCTATAGCTGGAAAATTAATTCCAGTTCCCAAAACACCATTGTCGCGTTACTTCACAAAGCCACTCAGGCGATTGAGGAGATCTCGTTCAGCACAATAG 3306 0.4268 MTTSNGHHTVTIAAGQNDNNNNNNNNEDDDNLPPSNNNRRDDDDKDNDQQIDPDDPFDITQTKNASHETLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFRLAGERELVISPAATPPPQTSVGDYGVGLEQLASMSKDQNVSALQQYGGVKGLSNLLKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLSEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVIRGGRTIKISIFDIVVGDVIPLKIGDQVPADGVVITSHSLAIDESSMTGESKIVHKDHKAPFFMSGCKVADGVGVMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVSVLAVLLGRYFSGHTNDLDGNPEFVAGRTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGRNKLNPPDDSSMLHPEALSLINESIAQNSTGNVFLSKDGGEVEVSGSPTEKAILSWAVKLGMNFDLIRSNSTVLHVFPFNSEKKRGGVALKLVDSGVHIHWKGAAEIVLGACTQYLDSNGHLQSLEEEKTFFKEAIDDMAARSLRCVAIAYRSYDLDKVPSNEQDLDQWSLPEDELILLAIVGIKDPCRPSVKDAVRVCTDAGVKVRMVTGDNLQTAKAIALECGILASIEEAVEPNIIEGKVFRELSEKEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQIVVLLVLNFAGESILPKQDTRAHSYQVKNTLIFNAFVMCQIFNEFNARKPDEMNVFRGVTKNRLFMGIVGVTFILQIIIIEFLGKFASTVRLDWKLWLASVLIGLVSWPLAIAGKLIPVPKTPLSRYFTKPLRRLRRSRSAQ 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00147 1101 SUPERFAMILY HAD-like 506 920 IPR036412 -
Trre8g00147 1101 FunFam Calcium-transporting ATPase 707 860 - -
Trre8g00147 1101 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 515 712 IPR023299 GO:0000166
Trre8g00147 1101 FunFam Calcium-transporting ATPase 65 121 - -
Trre8g00147 1101 Pfam Cation transporter/ATPase, N-terminus 166 233 IPR004014 -
Trre8g00147 1101 NCBIfam calcium-translocating P-type ATPase, PMCA-type 155 1078 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre8g00147 1101 Gene3D - 505 860 IPR023214 -
Trre8g00147 1101 PRINTS P-type cation-transporting ATPase superfamily signature 839 851 - -
Trre8g00147 1101 PRINTS P-type cation-transporting ATPase superfamily signature 730 740 - -
Trre8g00147 1101 PRINTS P-type cation-transporting ATPase superfamily signature 708 719 - -
Trre8g00147 1101 PRINTS P-type cation-transporting ATPase superfamily signature 508 522 - -
Trre8g00147 1101 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Trre8g00147 1101 PRINTS P-type cation-transporting ATPase superfamily signature 815 834 - -
Trre8g00147 1101 MobiDBLite consensus disorder prediction 1 68 - -
Trre8g00147 1101 Pfam E1-E2 ATPase 285 486 - -
Trre8g00147 1101 CDD P-type_ATPase_Ca_PMCA-like 190 948 - -
Trre8g00147 1101 Gene3D - 216 1066 - -
Trre8g00147 1101 Pfam haloacid dehalogenase-like hydrolase 505 829 - -
Trre8g00147 1101 SUPERFAMILY Calcium ATPase, transmembrane domain M 165 1078 IPR023298 -
Trre8g00147 1101 FunFam Calcium-transporting ATPase 264 384 - -
Trre8g00147 1101 ProSitePatterns E1-E2 ATPases phosphorylation site. 510 516 IPR018303 -
Trre8g00147 1101 FunFam Calcium-transporting ATPase 832 1080 - -
Trre8g00147 1101 SFLD Haloacid Dehalogenase 490 867 - -
Trre8g00147 1101 MobiDBLite consensus disorder prediction 1 32 - -
Trre8g00147 1101 PRINTS Sodium/potassium-transporting ATPase signature 627 645 - -
Trre8g00147 1101 PRINTS Sodium/potassium-transporting ATPase signature 251 271 - -
Trre8g00147 1101 PRINTS Sodium/potassium-transporting ATPase signature 501 522 - -
Trre8g00147 1101 SUPERFAMILY Calcium ATPase, transduction domain A 286 381 IPR008250 -
Trre8g00147 1101 Gene3D - 518 715 IPR023299 GO:0000166
Trre8g00147 1101 Gene3D - 65 119 - -
Trre8g00147 1101 Pfam Cation transporting ATPase, C-terminus 900 1075 IPR006068 -
Trre8g00147 1101 Coils Coil 650 670 - -
Trre8g00147 1101 NCBIfam HAD-IC family P-type ATPase 446 541 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g00147 1101 NCBIfam HAD-IC family P-type ATPase 781 895 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g00147 1101 FunFam Calcium-transporting ATPase 216 273 - -
Trre8g00147 1101 PANTHER CATION TRANSPORTING ATPASE 123 1078 - -
Trre8g00147 1101 FunFam Calcium-transporting ATPase 9 plasma membrane-type 362 532 - -
Trre8g00147 1101 Pfam Ca2+-ATPase N terminal autoinhibitory domain 54 95 IPR024750 GO:0005516
Trre8g00147 1101 FunFam Calcium-transporting ATPase 518 715 - -
Trre8g00147 1101 Gene3D - 189 384 - -
Trre8g00147 1101 SFLD p-type atpase 490 867 IPR044492 -
Trre8g00147 1101 SMART Cation_ATPase_N_a_2 164 238 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00147 Trre-Chr8 999256 1012012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00147 40 1100 Primary Pumps ATPases AT3G21180 78.269 0.0 1681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00147 K01537 - gmx:100777143 1841.62