Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00146 ATGGGTGGTGAAGAGGTGAAAACTATTGTTGTTCCGGAGTCTGTGTTGAAGAAGCAGAAGAGAGAAAATGAATGGGCTTTAACTAAAAAGCAAGAATTTGAAGCTGCTAAGAAGAAAAGAGCTGAGAATCGTAAACTTATCTATAGCAGAGCTAAGCAGTATTCTCAAGAGTATGAGCAACAGGATAAGGAATTGATTCGATTGAAACGAGAAGCAAAGCTAAGAGGTGGATTCTATGTTGATCCAGAGGCTAAGCTCTTGTTTATTATTCGCATTCGTGGTATTAATGCCATGGACCCCAAGACAAGAAAGATCTTGCAACTATTTCGATTGAGACAGGTTTTCAATGGTGTTTTCCTTAAAGTTAACAAAGCAACCATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGATACCCTAATTTGAAGAGTGTAAGGGAACTCATTTATAAGAGAGGTTATGGAAAGCTAGACAGGCAGCGTACTCCTCTCACCGACAACTCCATTATTGAGCAGGGACTGGGAAAGCATGGTATCCTATGCATTGAAGATCTTATTCATGAGATTTTGACTGTTGGACCACATTTTAAGGAGGCAAACAACTTCCTCTGGCCATTCAAGCTCAAGGCACCTTTGGGAGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGAGGTGATGCTGGAAATCGGGAGAATTACATTAATGAGCTCATCAGGAGAATGAATTAA 738 0.4051 MGGEEVKTIVVPESVLKKQKRENEWALTKKQEFEAAKKKRAENRKLIYSRAKQYSQEYEQQDKELIRLKREAKLRGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQVFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDNSIIEQGLGKHGILCIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00146 245 FunFam 60S ribosomal protein L7 191 245 - -
Trre8g00146 245 SUPERFAMILY Ribosomal protein L30p/L7e 86 245 IPR036919 -
Trre8g00146 245 FunFam 60S ribosomal protein L7 86 190 - -
Trre8g00146 245 Coils Coil 51 71 - -
Trre8g00146 245 Pfam Ribosomal protein L30p/L7e 87 137 IPR016082 -
Trre8g00146 245 Pfam Ribosomal L30 N-terminal domain 11 82 IPR012988 -
Trre8g00146 245 ProSitePatterns Ribosomal protein L30 signature. 105 137 IPR018038 -
Trre8g00146 245 Gene3D - 86 190 IPR036919 -
Trre8g00146 245 Gene3D - 191 245 IPR036919 -
Trre8g00146 245 PANTHER 60S RIBOSOMAL PROTEIN L7 10 245 IPR039699 -
Trre8g00146 245 CDD Ribosomal_L7_archeal_euk 86 245 IPR035808 -
Trre8g00146 245 NCBIfam 60S ribosomal protein uL30 12 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00146 Trre-Chr8 988076 990021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00146 1 245 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 82.857 5.24e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00146 K02937 - gmx:100813342 419.853