Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00140 ATGAAGTGCAATAAAGCTTGTGAACTTTGCAATCAAAATGCTTCTTTCTATTGTCCTTCCGATTCGGCTTTTCTTTGCCGGAACTGCGACGACGCCGTTCACGGTGCCAACTTCCTTGTCGCTCGCCACATCCGTCACATTCTCTGCTCAAAATGTGACGGTTTCACTGGAAATCACATCTCCGGGACTACACTCCACCATAGACTCCGATCAACTTGCCGTTCTTGCTTGCCGGAAAATCATTCCGATGATGCAGATTCTCAATCTTCTTCATCTTTTGAGTCTTGCGTTACGGAACCGAAGGAGAGAAAAGTTAAAAGGATTAAGAGTTTTTCAAGTTTTGTTACCGACGATGCATCTCCATCGGAGAAGAAGAAGATGAGAATTGGATCGGGGGAGGAAGAGCTTTTTGTGAAATGGAGAAGAGAGTTAGGATTAGATTTTCCGGTGAACGGTAACGGTATAGCGGTGGAGGCGTTGGGTGTGTGTTTGAGAACGTGGAAGTTACTTCCATTAAAGGTGGCTGCTGCGACGTCGTTTTGGTTGTCGTTAAGATTTTGTGGGGACGGTTGTTATGCCACGTGTCGGAATCTAATGAAGTTAGAGAAAATATCAGGGGTGCCAGCGAAGCTGATTTTAGCCACACATGTGAAACTCACACGTGTCTTTACACAACACCTTGAATTGCAAGAAGGATGCGACGAGTGCTAA 711 0.4543 MKCNKACELCNQNASFYCPSDSAFLCRNCDDAVHGANFLVARHIRHILCSKCDGFTGNHISGTTLHHRLRSTCRSCLPENHSDDADSQSSSSFESCVTEPKERKVKRIKSFSSFVTDDASPSEKKKMRIGSGEEELFVKWRRELGLDFPVNGNGIAVEALGVCLRTWKLLPLKVAAATSFWLSLRFCGDGCYATCRNLMKLEKISGVPAKLILATHVKLTRVFTQHLELQEGCDEC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00140 236 Pfam B-box zinc finger 5 35 IPR000315 GO:0008270
Trre8g00140 236 ProSiteProfiles Zinc finger B-box type profile. 2 48 IPR000315 GO:0008270
Trre8g00140 236 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 6 113 - -
Trre8g00140 236 SMART bboxneu5 2 48 IPR000315 GO:0008270
Trre8g00140 236 CDD Bbox1_BBX-like 6 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00140 Trre-Chr8 914389 915099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00140 7 227 C2C2-CO-like Transcription Factor Family AT3G21150 33.032 2.88e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre8g00140 zf-B_box 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00140 - - gmx:102667703 259.225