Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00125 ATGGCCAAGAAATCTCAAAAATCTCATAAAACCACTTCTTCTAATTCTTCTTCAACTACCATGGTGAAACGTAAACGTAAAAGCATCCCAAGAAACTCACCTCCACAAAGAAGCTCAATTTATAGGGGTGTTACAAGACATCGTTGGACTGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCACAAAGCAAGAAAGGAAGACAAGTGTATCTAGGAGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTATTGGGGCCAAGATACAATTCTCAATTTTCAAGTATCAAATTATCAAGAGGAGCTCAAAGAGATGGAGGGACAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGTGGATTTTCTAGAGGAGTCTCAAAATACAGAGGTGTAGCAAGACACCATCACAATGGAAGATGGGAAGCTCGAATTGGCAGGGTCTTCGGCAACAAATATTTATACCTTGGAACTTACGAAGAAGCAGCCACAGCATATGACGTGGCAGCAATACAGTACAGAGGACTTAACGCCGTTACAAACTTTGATCTTAGTCGTTATAGCAATTGGTTAGATCCTAAAACTCAAGACAACAATGATAATAACAACCATAATAATCAAAATTCTAGCAATAATCAAGAGCTAGATCTTAATCAAGAACTTGATGTCAGTGCCACATCAGCATCTTCGCCACTCGATCGCATCTTAAAATCATCAAAATTCACGGAAATGATAGAAAAAACATTACCGGACGAAATTGAAGATAGTTACACTCCACCATCTTCTGAGTCAACTCCTCCACGTCGTACTTTTCCCGAAGATATTCAAACGATTTTTGAAACACAAGATTCAAGTATCTACACTGAAAATGATCATGACATTATATTTGGTGAGTTAAGCTCAATTGATGCCCCAATTTTTCATTATGGACTTGATGCTTGA 984 0.3801 MAKKSQKSHKTTSSNSSSTTMVKRKRKSIPRNSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFQVSNYQEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYEEAATAYDVAAIQYRGLNAVTNFDLSRYSNWLDPKTQDNNDNNNHNNQNSSNNQELDLNQELDVSATSASSPLDRILKSSKFTEMIEKTLPDEIEDSYTPPSSESTPPRRTFPEDIQTIFETQDSSIYTENDHDIIFGELSSIDAPIFHYGLDA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00125 327 ProSiteProfiles AP2/ERF domain profile. 142 197 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 Pfam AP2 domain 40 98 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
Trre8g00125 327 ProSiteProfiles AP2/ERF domain profile. 40 106 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 230 - -
Trre8g00125 327 SUPERFAMILY DNA-binding domain 39 108 IPR016177 GO:0003677
Trre8g00125 327 CDD AP2 141 199 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 MobiDBLite consensus disorder prediction 262 284 - -
Trre8g00125 327 MobiDBLite consensus disorder prediction 7 23 - -
Trre8g00125 327 MobiDBLite consensus disorder prediction 1 43 - -
Trre8g00125 327 MobiDBLite consensus disorder prediction 269 284 - -
Trre8g00125 327 FunFam AP2-like ethylene-responsive transcription factor 39 108 - -
Trre8g00125 327 PRINTS Ethylene responsive element binding protein signature 179 199 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 MobiDBLite consensus disorder prediction 207 226 - -
Trre8g00125 327 Gene3D AP2/ERF domain 40 108 IPR036955 GO:0003700|GO:0006355
Trre8g00125 327 Gene3D AP2/ERF domain 141 199 IPR036955 GO:0003700|GO:0006355
Trre8g00125 327 SMART rav1_2 40 112 IPR001471 GO:0003700|GO:0006355
Trre8g00125 327 SMART rav1_2 142 203 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00125 Trre-Chr8 826034 833843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00125 136 206 AP2-EREBP Transcription Factor Family AT5G57390 39.024 1.74e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre8g00125 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00125 K09285 - gmx:100807781 425.246