Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00124 ATGGAGAAGTACGAAAAACTCGAGAAAGTAGGAGAAGGAACATACGGCAAAGTATATAAAGCAAAAGAAATCTCCACTGGCCAAATCGTCGCACTAAAAAAAACTCGTCTCGAAATGGACGAAGAAGGTGTTCCTCCTACAGCACTTCGTGAAATTTCTCTCCTTCAAATGCTCTCTCAATCTCTCTACATCGTTCGTCTTCTCAACGTCGAACACGTTGACAAACTCCCCAAAAATGCTACCCACACCCCTCCTAAACCACTCATCTATCTTGTTTTTGAATATCTCGACACCGATCTCAAGAAATTCATTGATACTTTTCGGAAAGGTGTAAACCCTAGACCGTTGCCGAATTCACTTGTTCAGAGTTTTTTGTTTCAGCTTTGTAAAGGTGTTGCTCATTGTCATAGTCATGGTGTTCTTCATCGTGATTTGAAACCTCAGAATTTGTTGCTTGATCAACAGAAAGGGATTTTGAAAATTGCTGATTTAGGTCTTGGTAGAGCTTTTACTGTTCCTCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAGGTTTTGCTTGGATCTACTACTTATTCTACTGGTGTTGATATCTGGTCTGTTGGATGCATCTTTGCTGAAATGGTGAGAAGACAAGCTTTGTTTCCAGGGGATTCTGAGTTCCAGCAGCTTCTTAACATATTCAAGCTTTTGGGGACTCCAACAGAGCAGGACTGGCCAGGAGTTAGCTCTCTGCGTGATTGGCATGTCTACCCAAGGTGGGAGCCTCAGAACTTGGCAAGGGCTGTGCCCTCATTAGCACCTGAAGGAGTAGACCTTCTCTCGAAAATGCTCAAGTATAATCCTAATGAGAGAATATCTGCCAAAGCAGCACTTGATCATCCCTACTTTGACAGTCTTGACAAGTCTCAATATTAA 936 0.4199 MEKYEKLEKVGEGTYGKVYKAKEISTGQIVALKKTRLEMDEEGVPPTALREISLLQMLSQSLYIVRLLNVEHVDKLPKNATHTPPKPLIYLVFEYLDTDLKKFIDTFRKGVNPRPLPNSLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTGVDIWSVGCIFAEMVRRQALFPGDSEFQQLLNIFKLLGTPTEQDWPGVSSLRDWHVYPRWEPQNLARAVPSLAPEGVDLLSKMLKYNPNERISAKAALDHPYFDSLDKSQY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00124 311 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre8g00124 311 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Trre8g00124 311 Gene3D Transferase(Phosphotransferase) domain 1 99 311 - -
Trre8g00124 311 SUPERFAMILY Protein kinase-like (PK-like) 1 306 IPR011009 -
Trre8g00124 311 ProSiteProfiles Protein kinase domain profile. 4 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00124 311 FunFam Cyclin-dependent kinase 2 99 310 - -
Trre8g00124 311 PANTHER CELL DIVISION PROTEIN KINASE 1 303 - -
Trre8g00124 311 FunFam Cyclin-dependent kinase 4 1 97 - -
Trre8g00124 311 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Trre8g00124 311 SMART serkin_6 4 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00124 311 Pfam Protein kinase domain 4 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00124 Trre-Chr8 818175 821071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00124 1 311 Core Cell Cycle Gene Families AT3G54180 81.994 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Trre8g00124 Pkinase 2.2e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00124 K07760 - gmx:100805119 559.296