Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00091 ATGTTTGATTCTGGTTACAAGTCACAGTATATTGGAGGTCAAAAGGAGAAATTTGTGAGGTTGGATGATTTGGATTCCAATTTGAATACGCCGTCTAGCTCAAGAGGGATGAAGAAATTAAGATTTAATTTAGATTCATTGCCTATTCCTTTTCGCGATCCGGGATTGATCGCAAAGCGATATTTACGACGATACTTCATTTTTGACTTCTGGTCTGTACTGCCATTGCCACAGTTTGTAGTGTGGAAATATCTTTATAGTTCAAGACAAGTTAAAAAGACAGCTGGTGTTTTTTCTGAAAATGCATTGCTCGGTGCTATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATAACAGAAGTCTTTCCCAAATTTTGTTACTGTCTATGGTGGGGCCTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTTTTTTCTCTTTTGATTGGGAACATGCAGACCTACCTTAATTCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGAGCTAAGGGAAAGAGTCAGACGTTACGACCAATACAAGTGGCTGAACACCCGAGGGGTCGATGAAGAAAGCTTGGTTCAGAGTCTCCCAAAAGATCTCAGAAGAGATATCAAACGCCATCTTTGTTTGAATTTGGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGATGCGATATGCGAGCGATTGAAACCAAGTTTATATACAGAAAAAACTTACATAGTTAGGGAAGGTGATCCAGTTGACGAGATGTTGTTCATTATTCGTGGTCGTCTAGATAGTGTTACTACAGATGGTGGGAGAAGCGGCTTTTTCAACAGAGGAATTTTGAAGGAAGGTGATTTCTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCGGCTAACTTACCATCATCAACAAGAACAGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAGTTAAAGTTTGTTGCATCACAGTTTAGACACATACATAGCAGACAGGTTCAGCATACGTTCCGATTCTACTCGCAACAATGGAGAACATGGGCCGCAATCTACATTCAAGCTGCATGGAGGAAGCATTTAAGGAGAAAACGCAGAAAGGAAGAGGAAGAAGAATATTATGAATCTGATTATGGAGGAAGTGATGATCCTGCTAGGGCTTTGGTTCCGCGTGCTGAAAGTTCGTCAAGATTTGGATTTAATACAACAATATACGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACGTCGAGTTCCAAGTTCAAGCGACCTGGTGAACATTCCAAAGCCCCCAGAACCTGACTTCAGTGCTCTTGATAATGAAGAGTGA 1476 0.4214 MFDSGYKSQYIGGQKEKFVRLDDLDSNLNTPSSSRGMKKLRFNLDSLPIPFRDPGLIAKRYLRRYFIFDFWSVLPLPQFVVWKYLYSSRQVKKTAGVFSENALLGAMYYLIWYMLASHITEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIVREGDPVDEMLFIIRGRLDSVTTDGGRSGFFNRGILKEGDFCGEELLTWALDPKSAANLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLRRKRRKEEEEEYYESDYGGSDDPARALVPRAESSSRFGFNTTIYASRFAANLRGHRRRVPSSSDLVNIPKPPEPDFSALDNEE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00091 491 Gene3D - 100 186 - -
Trre8g00091 491 SUPERFAMILY Voltage-gated potassium channels 63 220 - -
Trre8g00091 491 SMART cnmp_10 257 388 IPR000595 -
Trre8g00091 491 Pfam Cyclic nucleotide-binding domain 278 367 IPR000595 -
Trre8g00091 491 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 121 484 - -
Trre8g00091 491 FunFam Cyclic nucleotide-gated ion channel 1 255 373 - -
Trre8g00091 491 ProSiteProfiles IQ motif profile. 393 422 IPR000048 GO:0005515
Trre8g00091 491 MobiDBLite consensus disorder prediction 463 491 - -
Trre8g00091 491 FunFam Cyclic nucleotide-gated ion channel 1 184 248 - -
Trre8g00091 491 SUPERFAMILY cAMP-binding domain-like 187 377 IPR018490 -
Trre8g00091 491 ProSiteProfiles cAMP/cGMP binding motif profile. 257 387 IPR000595 -
Trre8g00091 491 Gene3D Helix hairpin bin 187 248 - -
Trre8g00091 491 Pfam Ion transport protein 122 184 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre8g00091 491 CDD CAP_ED 257 388 IPR000595 -
Trre8g00091 491 Gene3D Jelly Rolls 255 375 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00091 Trre-Chr8 636653 640631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00091 120 491 Ion Channels AT1G19780 77.690 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00091 K05391 - gmx:100810453 581.252