Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00088 ATGTCTTTGAAGATAGGAACTCAAAATTGGCCAAAATCATCATCAGAAAAAGTTGAAGAACCATTGATAGTGATTAGAAAGTATGATGAAGAGAAACACAAAGTGGAAGTAGAGAAATTGGAGAGGCTTTGTGAAGTTGGACAGAGAGGAAAACCTTCTCTTGTTACTGACTTATTGGGTGACCCTATATGCAGAATTCGTCACTTTCAATTACATGTCATGCTGGTTGCAGAATATGGAGAAGAAGGAGAAATTGTTGGAGTGATAAGGGGTTGTGTGAAAACAGTTGCAAGAGGGAATTCAGCTTATGTAAAAATTGCTTATGTTTTAGGACTCAGAGTCTCTCCCAAACACAGGAGATTTGGCATTGGGACAAAATTAGTTGAACATTTAGAAGAGTGGTGCAAGCAAAAAGGAGCCAAGTATGCATATATGGCAACTGATTGTACAAATGAGCCATCCATCAATTTGTTCACAAAAAAATGTGGTTACTCAAAATTTAGGACTCTAACCATGCTAGCGCAACCTGTTCATGCTCATTACAAGCCAATCAGCACAAATATTGCCATTCTTCGCCTACCACCGCGCCTAGCCGGGTACACATACAACAATGTGTTCACCAATTCAGAGTTTTTCCCAAAAGACATGGACTTGATTTTGTCAAATAAACTTAATTTGGGCACATTCATGGCCATCCCCAAAAAATACCTAAACAAATGTGATCCAAAAAATGGTATTTTCCCTCCAAGCTATGCAATATTAAGTGTGTGGAACACAAAAGAAGTGTTCAAATTACAAGTTAAAGGAGTGTCACCATTTGTGCATGCATGTTGTGTAGGTACAAGATTATTAGATGGATGTATGCCATGGCTAAGGTTACCTTCATTTCCTAATATTTTTAGGCCATTTGGAATTTATCTAATGTATGGATTACACATGGAGGGTAAATTTGGAAAACAACTTATGCAGTCATTATGTGGATTTGTGCATAATATGGCTAGAGATGATGGTGGTTGTGGGGCTATTGTAGCTGAAGTTAGTCAAAGGGACCCAGTTAGAGAAGCAATACCACATTGGAGCAAATTTTCTTGGGCTGAGGACATGTGGTGCATTAAGAATCTTGAGGGTATGAAGAAGGAAATTTTCCAAGAAAAATGTGGACTTTCTAATTGGTTGAATTATAGATCATCTTCATCAGTAATTTTTGTTGATCCTCGTGATTTTTGA 1227 0.3765 MSLKIGTQNWPKSSSEKVEEPLIVIRKYDEEKHKVEVEKLERLCEVGQRGKPSLVTDLLGDPICRIRHFQLHVMLVAEYGEEGEIVGVIRGCVKTVARGNSAYVKIAYVLGLRVSPKHRRFGIGTKLVEHLEEWCKQKGAKYAYMATDCTNEPSINLFTKKCGYSKFRTLTMLAQPVHAHYKPISTNIAILRLPPRLAGYTYNNVFTNSEFFPKDMDLILSNKLNLGTFMAIPKKYLNKCDPKNGIFPPSYAILSVWNTKEVFKLQVKGVSPFVHACCVGTRLLDGCMPWLRLPSFPNIFRPFGIYLMYGLHMEGKFGKQLMQSLCGFVHNMARDDGGCGAIVAEVSQRDPVREAIPHWSKFSWAEDMWCIKNLEGMKKEIFQEKCGLSNWLNYRSSSSVIFVDPRDF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00088 408 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 19 408 - -
Trre8g00088 408 CDD NAT_SF 74 144 - -
Trre8g00088 408 Gene3D - 20 169 - -
Trre8g00088 408 FunFam Putative N-acetyltransferase HLS1 38 169 - -
Trre8g00088 408 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 23 194 IPR000182 GO:0016747
Trre8g00088 408 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 23 170 IPR016181 -
Trre8g00088 408 Pfam Acetyltransferase (GNAT) family 74 164 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00088 Trre-Chr8 618018 621333 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Trre8g00088 Acetyltransf_1 4.2e-19 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00088 - - tpra:123923406 798.89