Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00083 ATGGATTGTTCATCATATATCAACACTTCCTTGGATCTCAACATCATTCCTTATAGAAATCATGAAGAAGTTCCTAAAGAGGTGGAAACCAACTTTTTCTCCTTAGGGATGACCAAGTTTTCTGTGAAAGATGAGTCCATTGATGAATTGGAGGAGGAACTGAAAAGAGTGACTGCAGAAAACAAGAAATTGGTGGAAATGCTTTCAGTGGTTTGTGAGAATTACAACACTTTGAGAAGTCATTTGGTGGAATATATGAGGAGAAATCCTGAAAAGGAACTTAGCACATCATCAAAGAAAAGAAAATCTGAAAGCAGCAACAATAACAATAGTAATTTGATTGGAATTAACAATGGAAACTCCGAAAGTAGCTCTACCGATGAAGAATCTTGTAAGAAACCAAGGGAGGAAGAAAATCTTAAAGCCAAAATTTCAAGAGCTTATGTTAGGACCGAAGCATCTGATACAGGCCTTATTGTCAAGGATGGATATCATTGGAGGAAATATGGACAAAAAGTGACAAGAGATAATCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGTCCAGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTATGCTTGTTGCTACTTATGAAGGAGAGCACAATCATCCTCAACCTCCTCAAATGGAGTCAACATCTGGTTCCGGCCGTAGCGTGAGCCTCAATTCGGTACCAACTTCAGCGTCACTAAGCTCATCAGCGCCAAAAGTTGTTACACTTGACTTAACAAATTCCAAGAATAGTAATAAAGATTCCAAGAATATTGAACCAAAAAAAGATTCGCCGAAGGTACCTAAGAATTTGGTGGAACAAATGGCTACTTCTTTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATATCAGGAAGATTGGTGCATAATAATTAA 942 0.3811 MDCSSYINTSLDLNIIPYRNHEEVPKEVETNFFSLGMTKFSVKDESIDELEEELKRVTAENKKLVEMLSVVCENYNTLRSHLVEYMRRNPEKELSTSSKKRKSESSNNNNSNLIGINNGNSESSSTDEESCKKPREEENLKAKISRAYVRTEASDTGLIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPPQMESTSGSGRSVSLNSVPTSASLSSSAPKVVTLDLTNSKNSNKDSKNIEPKKDSPKVPKNLVEQMATSLTTDPNFRAALVAAISGRLVHNN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00083 313 Coils Coil 40 67 - -
Trre8g00083 313 Gene3D WRKY domain 139 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00083 313 MobiDBLite consensus disorder prediction 266 280 - -
Trre8g00083 313 FunFam WRKY transcription factor 40 145 222 - -
Trre8g00083 313 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00083 313 MobiDBLite consensus disorder prediction 220 265 - -
Trre8g00083 313 MobiDBLite consensus disorder prediction 89 139 - -
Trre8g00083 313 MobiDBLite consensus disorder prediction 213 281 - -
Trre8g00083 313 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00083 313 MobiDBLite consensus disorder prediction 101 125 - -
Trre8g00083 313 SUPERFAMILY WRKY DNA-binding domain 158 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00083 313 ProSiteProfiles WRKY domain profile. 159 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00083 313 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 38 309 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00083 Trre-Chr8 582738 584943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00083 4 313 WRKY Transcription Factor Family AT1G80840 51.411 4.70e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g00083 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00083 - - gmx:100807966 436.032