Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00082 ATGGATTGTTCATCATATATCAACACTTCCTTGGATCTCAACATCATTCCTTATAGAAATCATGAAGAAGTTCCTAAGAAAGAGGTGGAAACCAACTTTTTCTCCTTAGGGATGACCAAGTTTTCTGTGAAAGATGAGTCCATTGATGAATTGGAGGAGGAACTGAAAAGAGTGACTGCAGAAAACAAGAAATTGGTGGAAATGCTTTCAGTGGTTTGTGAGAATTACAACACTTTGAGAAGTCATTTGGTGGAATATATGAGGAGAAATCCTGAAAAGGAACTTAGCACATCATCAAAGAAAAGAAAATCTGAAAGCAGCAACAATAACAATAGTAATTTGATTGGAATTAACAATGGAAACTCCGAAAGTAGCTCTACCGATGAAGAATCTTGTAAGAAACCAAGGGAGGAAGAAAATCTTAAAGCCAAAATTTCAAGAGCTTATGTTAGGACCGAAGCATCTGATACAGGCCTTATTGTCAAGGATGGATATCATTGGAGGAAATATGGACAAAAAGTGACAAGAGATAATCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGTCCAGTCAAAAAGAAGGTGCAAAGAAGTGTGGATGATCAATCTATGCTTGTTGCTACTTATGAAGGAGAGCACAATCATCCTCAACCTCCTCAAATGGAGTCAACATCTGGTTCCGGCCGTAGCGTGAGCCTCAATTCGGTACCAACTTCAGCGTCACTAAGCTCATCAGCGCCAAAAGTTGTTACACTTGACTTAACAAATTCCAAGAATAGTAATAAAGATTCCAAGAATATTGAACCAAAAAAAGATTCGCCGAAGGTACCTAAGAATTTGGTGGAACAAATGGCTACTTCTTTGACAACTGATCCAAATTTTAGAGCAGCACTTGTTGCAGCCATATCAGGAAGATTGGTGCATAATAATTAA 945 0.381 MDCSSYINTSLDLNIIPYRNHEEVPKKEVETNFFSLGMTKFSVKDESIDELEEELKRVTAENKKLVEMLSVVCENYNTLRSHLVEYMRRNPEKELSTSSKKRKSESSNNNNSNLIGINNGNSESSSTDEESCKKPREEENLKAKISRAYVRTEASDTGLIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSMLVATYEGEHNHPQPPQMESTSGSGRSVSLNSVPTSASLSSSAPKVVTLDLTNSKNSNKDSKNIEPKKDSPKVPKNLVEQMATSLTTDPNFRAALVAAISGRLVHNN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00082 314 ProSiteProfiles WRKY domain profile. 160 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00082 314 MobiDBLite consensus disorder prediction 102 126 - -
Trre8g00082 314 Gene3D WRKY domain 140 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00082 314 MobiDBLite consensus disorder prediction 221 266 - -
Trre8g00082 314 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 310 IPR044810 GO:0003700
Trre8g00082 314 MobiDBLite consensus disorder prediction 214 282 - -
Trre8g00082 314 SMART WRKY_cls 161 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00082 314 MobiDBLite consensus disorder prediction 90 140 - -
Trre8g00082 314 Pfam WRKY DNA -binding domain 162 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g00082 314 FunFam WRKY transcription factor 40 146 223 - -
Trre8g00082 314 Coils Coil 41 68 - -
Trre8g00082 314 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g00082 314 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00082 Trre-Chr8 582738 584943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00082 4 314 WRKY Transcription Factor Family AT1G80840 51.250 7.70e-96 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g00082 WRKY 2.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00082 - - gmx:100807966 431.409