Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00079 ATGGATCAACAAAACAAACAAAGTTTCCAAAACCCAAAGCACATAATTTTCAACAAGTATGAAATGGGAAAAGTCTTGGGTCAAGGAAACTTTGCAAAAGTTTACCATTGTAGAAGCCTCTCAACAAACGAGAGTGTAGCCACCAAGGTGATAAAGAAAGAGAAGCTAAAAAAAGAGAGGTTAGTGAAGCAAATCAAGCGTGAAGTTTCGGTTATGCGTCTTGTTCGTCATCCTCATATTGTTGATCTCAAAGAAGTTATGGCAACAAAGGGAAAAATATTTCTAGTTATGGAATATGTAAAAGGAGGTGAACTCTTCGCGAAAGTTGCAAAAGGAAAATTGAAAGAAGATGTTGCTAGAAAGTACTTTCAACAGCTTATTAGCGCTGTTGATTTTTGTCACAGTCGCGGTGTCACACACCGTGATTTGAAACCAGAGAATCTCCTCTTAGACGAAAACGAAGACCTAAAAGTCTCCGATTTTGGACTCTCGGCGTTACCAGAGCAACGTCGAGAGGATGGTATGCTTTTAACTCCATGTGGGACCCCTGCTTATGTGGCACCCGAGGTTTTGAAGAAGAAAGGGTATGATGGTTCTAAGGCTGATATATGGTCTTGTGGGGTTATCCTCTATGCCTTGATTTGTGGATATCTTCCTTTTCAAGGTGAGAATGTTATAAAGATTTATAAAAAGGCTTTTAAAGGCGAATATGAGTTACCTGAATGGATTTCACCACAAGCTAAAATATTAATTTCGAATCTTCTTGTTGCGGATCCTAAAAAGAGGTATTCCATTGTTGATATTATGAATGATCCTTGGTTTCGAATTGGTTTTGTTAGACCCATTGTGTTTTCCATGAATGATTCGAGTATTGAAGATAATGACAAAGACATCAATATTGATTTCAATGAGGTTTGTGAAGATGATGTTGATGTTCCGGAATTGATGATGGTGAAACCATCTCGTCCTTTTTATAATGCATTTGAGATAATTTCATCGTTGTCGCATGGTTTTGATCTTACAAATCTATTTGAGACGAGGAAAAAGTTGCCATCAATGTTTATATCGAAGTTTTCAGCTTCAACGGTGTTGGAGAAACTTGAGATGATGGCGAAGAAATTGAACTTTAGGATGACAGGGAAGAAGGAGTTTGTGGTGAGATTCGAGGGGACAAAGGATGGAAGAAAGGGGAAGGTGGCGATGATGATGGAGGTGTTTGGGGTGGCGCCAGAGGTGGCGGTGGTTGAGTTTTCTAAGTGTGGTGGAGACACATTGGAGTATGTTAAGCTGTGTGATGAACAACTAAGACCTTCACTCAAAGATATTGTTTGGAGTTGGCAAGGTGACATTCATATATAA 1359 0.3907 MDQQNKQSFQNPKHIIFNKYEMGKVLGQGNFAKVYHCRSLSTNESVATKVIKKEKLKKERLVKQIKREVSVMRLVRHPHIVDLKEVMATKGKIFLVMEYVKGGELFAKVAKGKLKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPEQRREDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALICGYLPFQGENVIKIYKKAFKGEYELPEWISPQAKILISNLLVADPKKRYSIVDIMNDPWFRIGFVRPIVFSMNDSSIEDNDKDINIDFNEVCEDDVDVPELMMVKPSRPFYNAFEIISSLSHGFDLTNLFETRKKLPSMFISKFSASTVLEKLEMMAKKLNFRMTGKKEFVVRFEGTKDGRKGKVAMMMEVFGVAPEVAVVEFSKCGGDTLEYVKLCDEQLRPSLKDIVWSWQGDIHI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00079 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 440 - -
Trre8g00079 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trre8g00079 452 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00079 452 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00079 452 FunFam Aurora kinase A 12 103 - -
Trre8g00079 452 Pfam NAF domain 324 378 IPR004041 GO:0007165
Trre8g00079 452 ProSitePatterns Protein kinases ATP-binding region signature. 26 53 IPR017441 GO:0005524
Trre8g00079 452 Gene3D Transferase(Phosphotransferase) domain 1 12 321 - -
Trre8g00079 452 FunFam Non-specific serine/threonine protein kinase 320 444 - -
Trre8g00079 452 SUPERFAMILY Protein kinase-like (PK-like) 16 337 IPR011009 -
Trre8g00079 452 ProSiteProfiles NAF domain profile. 320 345 IPR018451 GO:0007165
Trre8g00079 452 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g00079 452 Gene3D Kinase associated domain 1, KA1 322 445 - -
Trre8g00079 452 FunFam Non-specific serine/threonine protein kinase 13 313 - -
Trre8g00079 452 CDD CIPK_C 326 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00079 Trre-Chr8 560129 561487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00079 10 451 CBL-interacting serine-threonine protein kinases AT5G25110 59.502 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre8g00079 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00079 - - gmx:100812424 699.893