Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00078 ATGCCTGCCTATGATAACTCTTCATTAGTCTCCGGTGCCGGCCAAACCGTCTGTGTCACCGGTGCCGGTGGGTTCATAGCTTCTTGGCTTGTTAAACTTCTCTTGGAGAAAGGTTACACCGTTAGAGGAACCCTCCGAAACCCAGAGGATCCAAAGAATGGTCACTTGAAAGAATTGGAAGGAGCAAAAGAGAGACTAACTTTGCATAAGGTTGATCTTCTTGATCTTCAATCTATTCAATCTGTTATTCATGGTTGTCATGGTGTATTCCACACAGCCTCCCCTGTTACCGACAACCCGGAAGAGATGTTGGAGCCAGCAATAAATGGAACTAAGAATGTGATTATAGCGTCCGCAGAAGCAAAAGTGAGACGTGTGGTGTTCACTTCATCGATTGGAACCGTCTATATGAACCCAAATACAAGTAGAGATGTTGTGGTTGATGATTCGTATTGGAGCGATTTAGAATATTGCAAGAACACAAAGAATTGGTATTGTTATGGGAAGACAGTGGCTGAACAATCAGCATGGGATATAGCAAAAGAAAACCAAGTGGATTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGGCCATTACTACAATCCACAGTTAATGCTAGTACAATTCATATCCTCAAATACCTTAATGGTTCAGCCAAGACTTATGTGAATGCAACACAATCTTATGTTAGTGTTAAGGATGTTGCATTAGCACACCTTCTTGTTTATGAAACAAATTCTGCTTCTGGTAGATACATATGTTCTGATGCTCCCTTGCATCGCGGTGAAGTTGTTGAAATTTTGGCAAAATATTTCCTTGAGTATCCACTTCCTACCAAGTGTTCAGATGAAAAGAACCCAAGAGTGAAACCATTCATATTCTCAAATCAAAAGCTAAAAGACTTAGGATTGGAGTTCACCCCTGTGAAGCAATGTCTATATGACACAGTTAAAAGTCTACAAGAGAAAGGACACCTTCCTATTCCCCAAATGGAAGAAAACTCTGTTTAA 1011 0.4075 MPAYDNSSLVSGAGQTVCVTGAGGFIASWLVKLLLEKGYTVRGTLRNPEDPKNGHLKELEGAKERLTLHKVDLLDLQSIQSVIHGCHGVFHTASPVTDNPEEMLEPAINGTKNVIIASAEAKVRRVVFTSSIGTVYMNPNTSRDVVVDDSYWSDLEYCKNTKNWYCYGKTVAEQSAWDIAKENQVDLVVVNPVLVLGPLLQSTVNASTIHILKYLNGSAKTYVNATQSYVSVKDVALAHLLVYETNSASGRYICSDAPLHRGEVVEILAKYFLEYPLPTKCSDEKNPRVKPFIFSNQKLKDLGLEFTPVKQCLYDTVKSLQEKGHLPIPQMEENSV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00078 336 CDD FR_SDR_e 17 304 - -
Trre8g00078 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 321 IPR036291 -
Trre8g00078 336 Pfam NAD dependent epimerase/dehydratase family 17 247 IPR001509 -
Trre8g00078 336 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 16 317 - -
Trre8g00078 336 Gene3D - 14 336 - -
Trre8g00078 336 FunFam Cinnamoyl-CoA reductase 1 8 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00078 Trre-Chr8 542882 546050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00078 14 280 Monolignol Biosynthesis Gene Families AT1G80820 72.659 9.06e-138 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00078 K09753 - gmx:100811528 563.533