Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00070 ATGGTTTGTCTATTCATGATATTTTTGCTATGCAGTGAGGAAGCTGTTGCTGTAGCTGAGCCTGTTACCGTTGCCGCTGCTGGAATTCCAGGCGAGCCAATGGACATCATGACTGCCTTGCAACTCGTGCTTAGGAAGTCTTTAGCTTACGGTGGTCTTGCACGCGGCCTCCATGAAGGTGCAAAAGTAATTGAGAAACATGCAGGACAACTCTGTGTTCTTGCAGAGGATTGCGACCAACCTGACTATGTTAAACTTGTCAAGGCTCTTTGTGCTGAGCACAATGTTAGTCTGCTGACAGTTCCCAGTGCAAAGACACTTGGAGAATGGGCTGGTTTGTGCAAGATTGATTCAGAGGGAAAAGCTAGGAAAGTAACTGGCTGCTCCTGTGTTGTTGTCAAGGATTTTGGCGAGGAACATGAAGCCTACAATGTTGTTCTGCAGCACGTGAAAGCTCAGTGA 462 0.4719 MVCLFMIFLLCSEEAVAVAEPVTVAAAGIPGEPMDIMTALQLVLRKSLAYGGLARGLHEGAKVIEKHAGQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKAQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00070 153 SUPERFAMILY L30e-like 33 151 IPR029064 -
Trre8g00070 153 FunFam 40S ribosomal protein S12 19 153 - -
Trre8g00070 153 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 39 132 IPR004038 -
Trre8g00070 153 ProSitePatterns Ribosomal protein S12e signature. 39 57 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g00070 153 Gene3D - 10 153 IPR029064 -
Trre8g00070 153 PRINTS Ribosomal protein S12E family signature 123 136 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g00070 153 PRINTS Ribosomal protein S12E family signature 98 119 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g00070 153 PRINTS Ribosomal protein S12E family signature 57 73 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g00070 153 PRINTS Ribosomal protein S12E family signature 43 56 IPR000530 GO:0003735|GO:0005840|GO:0006412
Trre8g00070 153 PANTHER 40S RIBOSOMAL PROTEIN S12 30 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00070 Trre-Chr8 510693 511403 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00070 29 153 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 72.800 9.26e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00070 K02951 - gmx:100499723 257.684