Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g00062 ATGGACAATGAGGAAATCCCATCAGTACCTTCTACCCCTGCAACACCAGGTACTCCTGGTGCCCCTCTTTTTGGTGGTTTCAAATCTGAAAGAATTGGAAATGGTTCTGTTGTTGGTAGAAGTAAGTCACTCCTCAAGAATTTGAAATGTTTTAGTGTTGAAGAATGGACTTTGGAAGATGGTGCCTTACCTAAAGTCTCTTGCTCTTTGCCTCCTCCACCTGTCCCTCTTGCTAAAAAGGTTGGAGCAGAGTTTATAGGCACATTCATTCTAATGTTTGCTGGAATAGGCACTGCAATTGTGAACCAAAAGCTACATAACTCAGAGACACTAATTGGATGTGCCGGAGCTAATGGACTTGCTGTTATGATCATAATTTTATCAACTGGTCACATCTCTGGTGCTCATCTCAATCCTGCCGTCACCATTTCCTTTGCCGCATTAAAGCACTTCCCTTGGAAAAATGTACCTTTGTATGTTGGTACACAAGTTCTGGCATCAATATGTGCATCATATACTCTGAAAGGGGTTTTTCATCCATTCATGAATGGTGGAGTCACAGTTCCTTCAGTAGAATATGGCCAAGCTTTTGCTTTAGAGTTTATTATCAGCTTTAATCTCATGTTTGTTGTCACTGCTGTGGCCACCGACACAAGAGCTGTGGGTGAGCTTGCGGGAATCGCGGTGGGAGCTACTGTCATGCTCAACATCCTCATAGCTGGGCCTGCAACTGGAGGTTCAATGAATCCAGTAAGAACATTGGGCCCAGCAATTGCTGCAAACAACTACAAAGGCATATGGATATATCTCATAGCCCCTATTATTGGTGCCCTAGCTGGGGCAGGTGCCTACACTGCCGTCAAACTCCATGATGAAGAATTTAACTCTGAGGTAAAAGCCTCTTCTGCCCCTGGAAGCTTCAGAAGATGA 930 0.4419 MDNEEIPSVPSTPATPGTPGAPLFGGFKSERIGNGSVVGRSKSLLKNLKCFSVEEWTLEDGALPKVSCSLPPPPVPLAKKVGAEFIGTFILMFAGIGTAIVNQKLHNSETLIGCAGANGLAVMIIILSTGHISGAHLNPAVTISFAALKHFPWKNVPLYVGTQVLASICASYTLKGVFHPFMNGGVTVPSVEYGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPATGGSMNPVRTLGPAIAANNYKGIWIYLIAPIIGALAGAGAYTAVKLHDEEFNSEVKASSAPGSFRR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g00062 309 Pfam Major intrinsic protein 77 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 PRINTS Major intrinsic protein family signature 230 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 PRINTS Major intrinsic protein family signature 267 287 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 PRINTS Major intrinsic protein family signature 155 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 PRINTS Major intrinsic protein family signature 199 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 PRINTS Major intrinsic protein family signature 118 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 Gene3D Glycerol uptake facilitator protein. 74 301 IPR023271 -
Trre8g00062 309 MobiDBLite consensus disorder prediction 1 27 - -
Trre8g00062 309 FunFam Aquaporin NIP2-1 67 299 - -
Trre8g00062 309 ProSitePatterns MIP family signature. 136 144 IPR022357 -
Trre8g00062 309 CDD MIP 79 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g00062 309 SUPERFAMILY Aquaporin-like 76 296 IPR023271 -
Trre8g00062 309 PANTHER AQUAPORIN NIP2-1 52 297 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g00062 Trre-Chr8 462954 466353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g00062 1 309 Major Intrinsic Protein MIP AT1G80760 73.163 7.95e-158 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g00062 K09874 - gmx:100798410 431.795